Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq15 275 4e-69 seq23376 140 2e-28 seq48 123 2e-23 seq19343 107 1e-18 seq18928 107 1e-18 seq37 91.5 1e-13 seq55 89.7 3e-13 >seq15 Length=620189 Score = 275 bits (304), Expect = 4e-69 Identities = 327/441 (74%), Gaps = 2/441 (0%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| || | || || |||||||| || | ||| || || || || || ||||| Sbjct 452786 ATGGGAACTTTAAATGTCAATCGTAAAGTCACTGACTTGTATTATCGTTATAAGATGCCA 452727 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||||| ||||| ||||| || || || ||||| || |||||||| || |||||||||||| Sbjct 452726 CGCATTTGCGCGAAGGTTGAAGGCAAAGGAAATGGGATTAAAACGGTGATTGTCAACATG 452667 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 |||| |||||||| || | || || || || || |||||||||||||||||||| Sbjct 452666 GCTGATGTCGCTAAAGCTTTGAATCGTCCAGCGACGTATCCGACGAAATATTTCGGGTGT 452607 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCG 6401 |||||||| || || || || |||||||| ||||| || || ||||| || ||||||||| Sbjct 452606 GAACTTGGAGCACAAACCCAATTTGATCATAAAAATGAACGTTTCATTGTCAACGGATCG 452547 Query 6402 CATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGT 6461 ||| | ||| ||| |||| || ||||| || ||||| |||||||||| ||| ||||| Sbjct 452546 CATGATGCTGGAAAGTTGCAAGATTTACTCGATGGCTTCATTCGCAAGTATGTCTTGTGT 452487 Query 6462 CGGGAATGCGATAACCCGGAGACCGAGCTTATTG-TGTCTACCAAGAGAAACACCATCTC 6520 | |||||||| || || || || || || ||| | || | |||| | | |||||| Sbjct 452486 CCCGAATGCGACAATCCTGAAACGGA-TTTGTTGATTTCGGCAAAGAAGGAAATCATCTC 452428 Query 6521 TCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTGGATTTATCACACAAACTCAACAC 6580 ||| |||||||| ||||| || ||||| | | | | | ||| || | ||||| Sbjct 452427 GCAGACATGCAAAGCTTGCGGATATCATGGATTGTTAGCTGTTCAACATAAGTTGAACAC 452368 Query 6581 CTTCATACTGAAGAATCCTCC 6601 ||||| |||||||||| || Sbjct 452367 TTTCATCTTGAAGAATCCACC 452347 >seq23376 Length=101 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAGGGAATCTCGT 62 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 63 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 97 >seq48 Length=1955607 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | |||||||||||||||||| || ||| || || || |||||||| Sbjct 847621 ACCACCACGAAGACGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCT 847562 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | |||| | || |||||||| || || || || || | ||||| ||||| | || Sbjct 847561 AAGAGTACGTCCATCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGG 847502 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||||||| || ||| ||| || ||||||| | ||||| |||||| Sbjct 847501 AATGCCTTCTTTATCTTGAATCTTTGCTTTGACATTCTCAATCGTATCCGATGGTTCAAC 847442 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || |||||||||||||| ||||| ||||| || |||||||| Sbjct 847441 CTCAAGGGTGATGGTTTTACCCGTCAATGTTTTGACGAAGATTTGCATGTT 847391 >seq19343 Length=119 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 81 CTCTCTATTCAGTGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 22 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||| ||| Sbjct 21 GGTAATATTTAGCTTTA 5 >seq18928 Length=122 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 118 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCTCTATCGGTCTCAT 59 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||| ||| Sbjct 58 GGTAATATTTAGCTTTA 42 >seq37 Length=1894237 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | |||||||| | ||| ||||||||||| ||||| || | Sbjct 798712 CCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCGCTC 798771 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| || | || || | ||| ||||| || || || | ||||| ||||| | ||| Sbjct 798772 AAAGTGCGGCCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGA 798831 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| || ||| ||| ||||| | | || ||| ||||||| Sbjct 798832 ATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACT 798891 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || ||||| || || ||||| ||||| ||||| || |||||| Sbjct 798892 TCAAGAGTGATAGTCTTGCCAGTCAAAGTTTTAACGAAGATTTGCATG 798939 >seq55 Length=2529122 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||| | |||||| ||| ||||| ||||| || || ||| Sbjct 2062129 TACCACCACGAAGACGGAGCACAAGATGAAGTGTGGATTCCTTCTGAATGTTATAGTCAC 2062070 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| |||| |||||||| ||||| ||||| || | ||||| ||||| | | Sbjct 2062069 TAAGAGTACGACCGTCTTCTAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAG 2062010 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| || || ||| ||||| | | |||||| || | Sbjct 2062009 GAATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATTGTATCTGATGGCTCGA 2061950 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| | || ||||| || || || | ||||||||||| || ||||| || Sbjct 2061949 CTTCGAGAGTGATAGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTT 2061898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334850195418053