Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq48 134 1e-26 seq37 125 6e-24 seq889 123 2e-23 seq55 100 2e-16 seq18525 98.7 9e-16 seq18365 93.3 4e-14 >seq48 Length=1955607 Score = 134 bits (148), Expect = 1e-26 Identities = 148/195 (76%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || |||||||| || || ||||||| | ||||| || | ||| Sbjct 647190 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCCTTGAAGTCGAACCATCT 647249 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| |||| |||| || ||||||||||| |||||||| || Sbjct 647250 GACACCATCGAAAACGTCA---AAGCCAAAATCCAA-GACAAAGAAGGAATTCCACCAGA 647305 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || | || || || ||||| ||| | ||||||| ||||||| || |||| || Sbjct 647306 CCAGCAACGTTTGATCTTCGCTGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTA 647365 Query 25175 CAATATTCAAAAAGA 25189 ||| || |||||||| Sbjct 647366 CAACATCCAAAAAGA 647380 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || |||||||| || ||||||| | ||||| || | ||| Sbjct 622220 ATGCAAATCTTCGTCAAAACATTGACCGGCAAGACCATCACCCTTGAAGTCGAACCATCT 622161 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| ||||| |||||||| ||||| Sbjct 622160 GACACGATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAG 622101 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| || || || ||| | ||||||| ||||||| || |||| ||||| Sbjct 622100 CAACGTTTGATTTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACAAC 622041 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||| || | ||||| || || Sbjct 622040 ATCCAAAAAGAATCAACTTTGCATTTGGTTCT 622009 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || |||||||| || ||||||| | ||||| || | ||| Sbjct 646278 ATGCAAATCTTCGTCAAAACATTGACCGGCAAGACCATCACCCTTGAAGTCGAACCATCT 646337 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| ||||| |||||||| ||||| Sbjct 646338 GACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAG 646397 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| || || || ||| | ||||||| ||||||| || |||| ||||| Sbjct 646398 CAACGTTTGATTTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACAAC 646457 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||| || | ||||| || || Sbjct 646458 ATCCAAAAAGAATCAACTTTGCATTTGGTTCT 646489 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || |||||||| || || ||||||| | ||||| || | ||| Sbjct 646506 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCCTTGAAGTCGAACCATCT 646565 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| ||| ||| || || ||||| ||||| || ||||| Sbjct 646566 GACACCATCGAAAACGTCAAGGCAAAGATCCAAGATAAGGAAGGAATTCCCCCAGACCAG 646625 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || || || ||| | ||||||| ||||||| || |||| ||||| Sbjct 646626 CAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACAAC 646685 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||||| || | ||||| || || Sbjct 646686 ATTCAAAAAGAATCAACTTTGCATTTGGTTCT 646717 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||||||||||| || | ||||| | ||||| || | || Sbjct 622449 AATGCAAATTTTCGTCAAAACTTTGACCGGCAAGACTATCACCCTTGAAGTCGAACCATC 622390 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || || | ||| ||| ||| ||||| ||||| |||||||| ||||| Sbjct 622389 TGACACCATTGAAAACGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACCA 622330 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || || || || ||| | ||||||| ||||||| || |||| ||||| Sbjct 622329 GCAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACAA 622270 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| ||||| || | ||||| || || Sbjct 622269 CATCCAAAAGGAATCAACTTTGCATTTGGTTCT 622237 Score = 122 bits (134), Expect = 8e-23 Identities = 158/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || || ||||||| | ||||| || | ||| Sbjct 645822 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGAAGTTGAACCATCT 645881 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| |||| |||||| ||||| ||||| ||||| || || Sbjct 645882 GACACCATCGAAAACGTCA---AAGC-CAAAATCCAAGACAAGGAAGGAATTCCTCCAGA 645937 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | || || || || || ||| | ||||||| |||||| || |||| || Sbjct 645938 TCAGCAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGCCGCACTTTGAGCGACTA 645997 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || ||||| ||||| || | ||||| || || Sbjct 645998 CAACATCCAAAAGGAATCAACTTTGCATTTGGTTCT 646033 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || |||||||| || || ||||||| | || || || | || Sbjct 646962 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCCTTGAGGTTGAACCATCC 647021 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| ||| ||| ||||| ||||| ||||| || ||||| Sbjct 647022 GACACCATTGAGAATGTTAAGGCAAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCAG 647081 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || || || ||| | ||||||| ||||||| || |||| ||||| Sbjct 647082 CAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACAAC 647141 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||| || | ||||| || || Sbjct 647142 ATCCAAAAAGAATCAACTTTGCATTTGGTTCT 647173 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || |||||||| || || | ||||| | ||||| || | || Sbjct 645594 ATGCAAATCTTCGTTAAAACTTTGACTGGCAAGACTATCACTCTTGAAGTTGAACCATCA 645653 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| ||| ||| ||||| ||||| ||||| || ||||| Sbjct 645654 GACACCATTGAAAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCAG 645713 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || || || ||| | ||||||| |||||| || |||| ||||| Sbjct 645714 CAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGGCGCACTTTGAGCGACTACAAC 645773 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||||| || | ||||| || || Sbjct 645774 ATTCAAAAAGAATCAACTTTGCATTTGGTTCT 645805 >seq37 Length=1894237 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || |||||||| || || ||||||| | || || || | ||| Sbjct 798710 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACTCTTGAGGTTGAACCATCT 798651 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| ||| ||| ||||| ||||| ||||| || ||||| Sbjct 798650 GACACCATTGAGAATGTTAAGGCAAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCAG 798591 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || || || ||| | ||||||| ||||||| || |||| ||||| Sbjct 798590 CAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACAAC 798531 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||| || | ||||| || || Sbjct 798530 ATCCAAAAAGAATCAACTTTGCATTTGGTTCT 798499 >seq889 Length=890 Score = 123 bits (136), Expect = 2e-23 Identities = 171/237 (72%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || || | ||||| | ||||| || | || Sbjct 88 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAGACTATCACTCTTGAAGTTGAACCATCG 147 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| || ||| ||||| ||||| ||||| || || Sbjct 148 GACACCATTGAAAACGTCA---AAGC-CAAGATCCAAGACAAGGAAGGAATTCCCCCAGA 203 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || | || || || || || ||| | ||||||| ||||||| || |||| || Sbjct 204 CCAGCAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTA 263 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 ||| |||||||| ||||| || | ||||| || || | || | || |||||||| Sbjct 264 CAACATTCAAAAGGAATCAACTTTGCATTTGGTTCTCCGTCTTCGTGGTGGAAATTA 320 >seq55 Length=2529122 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||| | || || || | ||||| ||||||| ||| | || Sbjct 2061900 AATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACTATCACTCTCGAAGTCGAGCCATC 2061959 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| || ||| ||||| ||||| ||||| || || || Sbjct 2061960 AGATACAATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCA 2062019 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || ||||| || || ||||||||||| | ||| ||| | | || || || Sbjct 2062020 GCAACGTTTGATCTTTGCTGGAAAGCAATTAGAAGACGGTCGTACTCTTAGTGACTATAA 2062079 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || |||||||| || ||| | ||||| Sbjct 2062080 CATTCAGAAGGAATCCACACTTCATCTTGTGCT 2062112 >seq18525 Length=125 Score = 98.7 bits (108), Expect = 9e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| |||||||| ||||| || || | ||||| || || || ||| | ||| Sbjct 1 GACAAGGAAGGAATTCCACCAGACCAGCAACGTTTGATTTTCGCTGGAAACCAACTCGAA 60 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| ||||||| || |||| ||||| || ||||||||||| || | ||||| || || Sbjct 61 GATGGTCGCACTTTGAGCGACTACAACATCCAAAAAGAATCAACTTTGCATTTGGTTCT 119 >seq18365 Length=126 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| |||||||| ||||| || || | ||||| || || | ||| | ||| Sbjct 2 GACAAGGAAGGAATTCCACCAGACCAGCAACGTTTGATTTTCGCTGGAAGGCAACTCGAA 61 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| ||||||| || |||| ||||| || ||||||||||| || | ||||| || || Sbjct 62 GATGGTCGCACTTTGAGCGACTACAACATCCAAAAAGAATCAACTTTGCATTTGGTTCT 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433202503200845