Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq43 356 3e-93 seq6 84.2 2e-11 >seq43 Length=2293527 Score = 356 bits (394), Expect = 3e-93 Identities = 515/718 (72%), Gaps = 13/718 (2%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||| ||||| ||||| ||||| || ||||||||||| |||| ||| || ||| Sbjct 2197226 TTAAAAATCAGCATCAAGTGTGAAAACATTGTCAAGACGATTTGC---CATCACTCCAGC 2197282 Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 |||||| || || |||||||| ||||| ||||| ||||| || || || | || || || Sbjct 2197283 TTTTTGATACTCTCCAACTTTCTTTTCGAAGAAGTTTGTTTTACCCTCAAGCGAGAT-GA 2197341 Query 92862 ATTCACT--AG-TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACA 92918 || | || ||| |||||||| | ||| || ||||| | ||| || | Sbjct 2197342 GCTCCATGAAGCTGAAAGGATTCTTTGTGTTGTAGATTTTTTCGACTCCCAATTCACCGA 2197401 Query 92919 ATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAA 92978 | | |||||| ||||| || ||||| |||||||||| || |||||||| || | | Sbjct 2197402 GAAGACGATCAGCAACAAACTCAATGTATTGAGACATCAGTTCGCAATTCATGCCCA--A 2197459 Query 92979 GACGT--ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 | || ||||| | || ||||| | ||| |||| || ||| ||| |||||| | Sbjct 2197460 CATGTTAACAGGCAAGGCATCGGTGAGGAATTCTTGTTCAATTTTAACAGCTTCTGAAAT 2197519 Query 93037 GATTTCTATTACTC-TACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG 93095 |||||| | | || | || ||||||||||| || || | || | | |||| || || | Sbjct 2197520 GATTTCGACAATTCGTTCT-TTTGGTGGTTTCTGGACAAGATGACGGAACATCAAACAAG 2197578 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTG 93155 |||| || ||| || |||||||| ||||| ||||| |||||| ||||| || || | Sbjct 2197579 CAAAATCACAATGCAAGCCTTCGTCACGTGAAATCAATTCATTGGAAAATGTCAATCCCG 2197638 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | || ||| |||||||| | ||||||||| | ||||||||| ||| || || || | Sbjct 2197639 GCATCAATCCACGTTTCTTAATCCAAAATATGGCAGCAAAACTTCCACTGAAGAAAATTC 2197698 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 |||| || ||||||||||| | ||| | ||| |||| || || ||||||||||||| Sbjct 2197699 CTTCAACTGCTGCAAATGCAATAATTCTTTCCCCAAAGTTGGCATTCTTACTGCTGATCC 2197758 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | || | ||||| || || || ||||| | ||| || | |||||||| |||||| |||| Sbjct 2197759 AGTTAATTGCCCAGTCAGCCTTCTTCTTCACACATGGCAATGTTTCGACAGCGTTGAATA 2197818 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | || ||||| | || | ||| ||||| || || || | || ||||||||||||| Sbjct 2197819 AAAATTCACGCTCTTTGGAGTTTCGAATGTAAGTTTCAATAAGCAAGGAATACATTTCAG 2197878 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 |||| ||||||||||| || ||||| || || || || || | ||||| || | ||| Sbjct 2197879 AATGTACATTCTCCATAGCTATTTGAAAACCATAAAAGCAGCGTGCTTCAGTAACCTG 2197936 >seq6 Length=2146333 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTC-GGGAGCGTGGGTTC 126330 |||||||| |||||||||||| ||||||||| ||| |||| | || | |||||||||||| Sbjct 1966429 TGGCCGAGCGGTCTAAGGCGCTAGATTTAAGCTCTAGTTCTCATCTGAGAGCGTGGGTTC 1966488 Query 126331 GAACCCCACACCTGACAA 126348 ||||||||| | || ||| Sbjct 1966489 GAACCCCACCCGTGTCAA 1966506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556695391460120