Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq48 147 2e-30 seq37 141 8e-29 seq889 134 1e-26 seq18525 104 2e-17 seq14265 102 7e-17 seq18365 98.7 8e-16 seq19743 87.8 2e-12 seq23527 84.2 2e-11 >seq48 Length=1955607 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || |||||||| || | | ||| ||||| | || ||||||||||| |||||||| ||| Sbjct 646507 ATGCCGCCACGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCG 646448 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| ||| ||| |||||| ||||| || |||||| | || | ||| || ||||| || Sbjct 646447 CTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAAATCAAACGTTGCTGGTCTGGT 646388 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| || | | ||||| |||||| | | |||| Sbjct 646387 GGAATTCCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCAGATGGTTCG 646328 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || |||||||||| ||||| || || || |||||| Sbjct 646327 ACTTCAAGGGTGATGGTCTTGCCGGTCAATGTTTTGACGAAGATTTGCATG 646277 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| ||||| | || |||||||||||||||||||| ||| Sbjct 646735 ATGCCACCACGGAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCG 646676 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| ||| ||| |||||| ||||| || |||||| |||| | ||| || ||||| || Sbjct 646675 CTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGG 646616 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || |||||| || | | ||| | |||||| | | |||| Sbjct 646615 GGAATTCCTTCCTTATCTTGGATCTTTGCCTTGACGTTTTCGATGGTGTCAGATGGTTCG 646556 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||| |||| |||||| || || || |||||| Sbjct 646555 ACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCATG 646505 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| ||||| | || ||||||||||| |||||||| ||| Sbjct 647191 ATGCCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCG 647132 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| ||| ||| |||||| ||||| || |||||| |||| | ||| || ||||| || Sbjct 647131 CTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGG 647072 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || | | |||| |||||||| | ||| Sbjct 647071 GGAATTCCTTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGATGGTTCA 647012 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||| |||| |||||| || || || |||||| Sbjct 647011 ACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCATG 646961 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| ||||| | || ||||||||||| |||||||| ||| Sbjct 621991 ATGCCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCG 622050 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| ||| ||| |||||| ||||| || |||||| | || | ||| || ||||| || Sbjct 622051 CTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAAATCAAACGTTGCTGGTCTGGT 622110 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| || | | ||||| ||||| | | |||| Sbjct 622111 GGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATCGTGTCAGATGGTTCG 622170 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || |||||||||| ||||| || || || |||||| Sbjct 622171 ACTTCAAGGGTGATGGTCTTGCCGGTCAATGTTTTGACGAAGATTTGCATG 622221 Score = 138 bits (152), Expect = 1e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||| | || |||||||||||||||||||| ||||||| ||| || |||||| Sbjct 645803 AACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTGCGCCCATCTTC 645744 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||||| || |||||| |||| | ||| || ||||| || ||||| ||||| ||||| Sbjct 645743 GAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTG 645684 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 |||||| || | | ||||| |||||| | | ||| || || | || | || || Sbjct 645683 GATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCAAGAGTGATAGTCTT 645624 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||| |||| |||||| || || || |||||| Sbjct 645623 GCCAGTCAAAGTTTTAACGAAGATTTGCATG 645593 Score = 131 bits (144), Expect = 1e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 |||||||| |||||||| ||||||| ||| ||| |||||| ||||| || |||||| || Sbjct 647380 TCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTGCCAGCGAAG 647321 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | ||| || ||||| || ||||| ||||||||||| || || ||| | | | Sbjct 647320 ATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTT 647261 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||| | | |||||| || | ||| | || ||||| |||| |||||| || Sbjct 647260 TCGATGGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACG 647201 Query 114372 AAAATCTGCATG 114383 || || |||||| Sbjct 647200 AAGATTTGCATG 647189 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | ||| || ||||| | || || ||||| || |||||||||||||| Sbjct 847621 ACCACCACGAAGACGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCT 847562 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | |||||| ||| || | ||| ||||||||| |||| | ||| || || || || || Sbjct 847561 AAGAGTACGTCCATCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGG 847502 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||||||||| || ||||||| ||| | | |||| || || | | ||| || Sbjct 847501 AATGCCTTCTTTATCTTGAATCTTTGCTTTGACATTCTCAATCGTATCCGATGGTTCAAC 847442 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | ||| | ||||| || |||| ||||| || || || |||||| Sbjct 847441 CTCAAGGGTGATGGTTTTACCCGTCAATGTTTTGACGAAGATTTGCATG 847393 Score = 98.7 bits (108), Expect = 8e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 114160 CACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAG 114219 |||| || | ||| || ||||| | || || ||||| || |||||||||||||| | || Sbjct 850886 CACGAAGACGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTAAGAG 850827 Query 114220 TACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGC 114279 |||| ||| || | ||| ||||||||| |||| | ||| || || || || ||||||| Sbjct 850826 TACGTCCATCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGC 850767 Query 114280 CTTCTTT 114286 ||||||| Sbjct 850766 CTTCTTT 850760 >seq37 Length=1894237 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || |||||||| || | | ||| ||||| | || ||||||||||| |||||||| ||| Sbjct 798481 ATGCCGCCACGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCG 798540 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| ||| ||| |||||| ||||| || |||||| |||| | ||| || ||||| || Sbjct 798541 CTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGG 798600 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || | | |||| |||||| | | ||| Sbjct 798601 GGAATTCCTTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATGGTGTCAGATGGTTCA 798660 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || ||||| |||| |||||| || || || |||||| Sbjct 798661 ACCTCAAGAGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCATG 798711 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| ||||| | || ||||| |||||||||||||| ||| Sbjct 798709 ATGCCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCG 798768 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| ||| || |||||| ||||| || |||||| |||| | ||| || || || || Sbjct 798769 CTCAAAGTGCGGCCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGG 798828 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || | | ||||| |||||| | | ||| Sbjct 798829 GGAATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCA 798888 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || ||||| |||| |||||| || || || |||||| Sbjct 798889 ACTTCAAGAGTGATAGTCTTGCCAGTCAAAGTTTTAACGAAGATTTGCATG 798939 >seq889 Length=890 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | ||| ||||| | || ||||| |||||||||||||| |||||| Sbjct 314 CCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCGCTC 255 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| ||| |||||| ||||| || |||||| |||| | ||| || ||||| || ||| Sbjct 254 AAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGA 195 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| ||||| ||||| ||| | | ||||| |||||| | | ||| || Sbjct 194 ATTCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCCGATGGTTCAACT 135 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || ||||| |||| ||| || || || || ||||| Sbjct 134 TCAAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 88 >seq18525 Length=125 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||| | || ||||||||||| |||||||| ||||||| ||| ||| |||||| Sbjct 117 AACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTC 58 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||||| || |||||| | || | ||| || ||||| || ||||| ||||| ||||| Sbjct 57 GAGTTGGTTTCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTC 1 >seq14265 Length=158 Score = 102 bits (112), Expect = 7e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | ||| ||||| | || |||||||||||||||||||| ||| Sbjct 40 ATGCCACCACGTAGACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTGTAGTCG 99 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 |||| ||| ||| |||||| ||||| || |||||| |||| | ||| || ||||| || Sbjct 100 CTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGG 158 >seq18365 Length=126 Score = 98.7 bits (108), Expect = 8e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||| | || ||||||||||| |||||||| ||||||| ||| ||| |||||| Sbjct 118 AACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTC 59 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||||| | |||||| | || | ||| || ||||| || ||||| ||||| ||||| Sbjct 58 GAGTTGCCTTCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTC 2 >seq19743 Length=116 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | ||| ||||| | || ||||||||||| ||||| || |||||| Sbjct 116 CCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGGATGTTTTAGTCGCTC 57 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | ||| ||| |||||| ||||| || |||||| |||| | ||| || ||||| || Sbjct 56 AAAGTGCGACCATCTTCGAGTTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGG 1 >seq23527 Length=101 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||| | || ||||||||||| |||||||| ||||||| | | ||| |||||| Sbjct 5 AACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCGCTCAAAATGCGACCATCTTC 64 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTC 114268 ||||| || |||||| |||| | ||| || ||||| Sbjct 65 GAGTTGCTTGCCAGCGAAGATCAAACGTTGCTGGTC 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420012724219956