Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq48 136 9e-27 seq889 131 4e-25 seq55 131 4e-25 seq37 114 3e-20 seq43 100 7e-16 >seq48 Length=1955607 Score = 136 bits (150), Expect = 9e-27 Identities = 148/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || |||||| | ||||| || ||||| | ||| ||||| ||||| Sbjct 646013 TTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCTTCGAGTTGCTTTCCAGCGAA 645954 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||| || ||| ||||| |||||||| || || |||||||| ||||| || Sbjct 645953 GATCAAACGTTGCTGA---TCTGGAGGAATTCCTTCCTTGTCTTGGATTTTGGCTTTGAC 645897 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | || | ||| ||||| || ||||| ||||| || |||| |||||| Sbjct 645896 GTTTTCGATGGTGTCAGATGGTTCAACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTT 645837 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 645836 GACGAAGATTTGCAT 645822 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||| || |||||| | ||||| || ||||| | ||| || || |||||| Sbjct 647380 TCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTGCCAGCGAAG 647321 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| || || ||| ||||||||||| || |||||||| ||||| |||||| Sbjct 647320 ATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTT 647261 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | ||| ||||| || ||||| ||||| || |||| ||| |||||| Sbjct 647260 TCGATGGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACG 647201 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 647200 AAGATTTGCAT 647190 Score = 120 bits (132), Expect = 7e-22 Identities = 169/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || | ||| | || |||||||||||| || |||| Sbjct 647192 CATG-CCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGT 647134 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || | ||||| || ||||| | ||| ||||| |||||||||| ||| || || | Sbjct 647133 CGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTG---GT 647077 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| |||||||| || || ||||| || || || || || || || | ||| | Sbjct 647076 CTGGGGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGATG 647017 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || ||||| ||||| || |||| ||| |||||||| || ||||| Sbjct 647016 GTTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 646962 Score = 118 bits (130), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || | ||| | || |||||||||||| || |||| Sbjct 621990 CATG-CCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGT 622048 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || | ||||| || ||||| | ||| ||||| ||||| |||| ||| || || Sbjct 622049 CGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAAATCAAACGTTGCTGGTCTG 622108 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| |||||||| || || ||||| || || || || ||||| || | || | || Sbjct 622109 GTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATCGTGTCAGATGGTT 622168 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| || ||||| ||||| ||||||| || |||||||| || ||||| Sbjct 622169 CGACTTCAAGGGTGATGGTCTTGCCGGTCAATGTTTTGACGAAGATTTGCAT 622220 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || |||||| | ||||| || ||||| | ||| ||||| ||||| Sbjct 646469 TTCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAA 646410 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| || || ||| |||||||| || || ||||| || || || || || Sbjct 646409 AATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTAACATT 646350 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | ||| ||||| || ||||| ||||| ||||||| || ||||| Sbjct 646349 TTCAATGGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTTGCCGGTCAATGTTTTGAC 646290 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 646289 GAAGATTTGCAT 646278 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || ||| || || ||||| || |||||||| || || |||||| Sbjct 847584 TCTTTCTGGATGTTGTAATCGCTAAGAGTACGTCCATCCTCTAATTGCTTACCAGCGAAG 847525 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||| || ||| ||||| || ||||||||||| || || || ||||| || Sbjct 847524 ATCAAACGTTGCTGA---TCTGGCGGAATGCCTTCTTTATCTTGAATCTTTGCTTTGACA 847468 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | ||| || || || ||||| || || || |||| || ||| Sbjct 847467 TTCTCAATCGTATCCGATGGTTCAACCTCAAGGGTGATGGTTTTACCCGTCAATGTTTTG 847408 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 847407 ACGAAGATTTGCAT 847394 >seq889 Length=890 Score = 131 bits (144), Expect = 4e-25 Identities = 170/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || |||||| || || | || || | ||| | || ||| ||||| || || ||||| Sbjct 318 ATTTCCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTC 259 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 | | ||||| || ||||| | ||| ||||| |||||||||| ||| || || || Sbjct 258 GCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGG---TC 202 Query 288363 TGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 |||| |||||||| || || ||||| || ||||| |||||||| || | || | Sbjct 201 TGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCCGATGG 142 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| ||||| || ||||| ||||| || |||| |||||||||||| || ||||| Sbjct 141 TTCAACTTCAAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 88 >seq55 Length=2529122 Score = 131 bits (144), Expect = 4e-25 Identities = 170/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||||| ||| ||| || || || |||||||| Sbjct 2062127 CCACCACGAAGACGGAGCACAAGATGAAGTGTGGATTCCTTCTGAATGTTATAGTCACTA 2062068 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || |||||||||||||| ||||| || ||||||| ||| || || |||| Sbjct 2062067 AGAGTACGACCGTCTTCTAATTGCTTTCCAGCAAAGATCAAACGTTGCTG---ATCTGGA 2062011 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| || || ||||| || || || || ||||| || | ||| | || Sbjct 2062010 GGAATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATTGTATCTGATGGCTCG 2061951 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 |||||||| ||||| ||||| || || ||||| || ||||| || |||||| || Sbjct 2061950 ACTTCGAGAGTGATAGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTTG 2061897 >seq37 Length=1894237 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || |||||| | ||||| || ||||| | ||| ||||| ||||| Sbjct 798519 TTCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAA 798578 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||| || || |||||| |||||||| || || ||||| || || || || Sbjct 798579 GATCAAACGTTGCTG---GTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTAAC 798635 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | || | ||| || || || ||||| ||||| || |||| ||| || Sbjct 798636 ATTCTCAATGGTGTCAGATGGTTCAACCTCAAGAGTGATGGTCTTGCCAGTCAAAGTTTT 798695 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 798696 GACGAAGATTTGCAT 798710 >seq43 Length=2293527 Score = 100 bits (110), Expect = 7e-16 Identities = 200/291 (69%), Gaps = 9/291 (3%) Strand=Plus/Minus Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCT-ATGATCGG 269156 ||||| |||| || ||| |||| ||| | || || | || |||| ||| | || Sbjct 2197513 GAAGCTGTTAAAATTGAACAAGAATTCCTCACCGATGCCTTGCC-TGTTAACATGTTGGG 2197455 Query 269157 TATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGC 269216 |||||| ||| || ||| |||||| || || || || ||||||||| |||| ||| Sbjct 2197454 CATGAATTGCGAACTGATGTCTCAATACATTGAGTTTGTTGCTGATCGT--CTTCTCGGT 2197397 Query 269217 --ACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATT 269274 | | || || ||| | ||||| | |||||||| ||| ||| ||||| || || Sbjct 2197396 GAATTGGGAGTCGAAAAAATCTACAACACAAAGAATCCTTTCAGCTTCATGGAGCTCATC 2197337 Query 269275 TCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGT 269334 ||||| || || || || ||||||||||||||| || | || |||||| |||| Sbjct 2197336 TCGCTTGAGGGTAAAACAAACTTCTTCGAAAAGAAAGTTGGAGAGTATCAAAAAGCTGGA 2197277 Query 269335 GTAATG---AATCCAGAAGACAATATTTTTGCCATCGATGATGATTTTTAA 269382 || ||| |||| |||||| |||| | | |||| |||||||||| Sbjct 2197276 GTGATGGCAAATCGTCTTGACAATGTTTTCACACTTGATGCTGATTTTTAA 2197226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179295238366314