Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq47 100 3e-16 seq18 100 3e-16 seq48 96.9 4e-15 seq889 84.2 2e-11 >seq47 Length=5381421 Score = 100 bits (110), Expect = 3e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| ||||| || ||||||||||||| |||| Sbjct 73930 AAAAAAATCCTCCCCGGCCGGGAATCGAACCCGGGTCTTCCACGTGACAGGCGGAGATAC 73871 Query 57058 TCACCACTATACTACCGAGGATT 57080 ||||||||||||||||||||||| Sbjct 73870 TCACCACTATACTACCGAGGATT 73848 >seq18 Length=398192 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 228060 CTCCCCGGCCGGGAATCGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 228119 Query 57067 TACTACCGAGGATTG 57081 ||||||||||||||| Sbjct 228120 TACTACCGAGGATTG 228134 Score = 95.1 bits (104), Expect = 1e-14 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| || ||| |||| | |||||||||| ||||| || ||||||||||||| ||| Sbjct 227880 AAAAATAATCCTCCCCGGCCGGGAATCGAACCCGGGTCTTCCACGTGACAGGCGGAGATA 227939 Query 57057 CTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||||| Sbjct 227940 CTCACCACTATACTACCGAGGA 227961 >seq48 Length=1955607 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||||||||| | ||| ||| || || || |||||||| ||||| || | Sbjct 847609 ACGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTAAGAGTACGTCC 847550 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || |||| |||||||||||||| || | || ||||| || | || | || || || Sbjct 847549 ATCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGGAATGCCTTCTTT 847490 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || ||| | |||| ||||| || | | ||| || | ||| || || | |||| Sbjct 847489 ATCT-TGAATCTTTGCTTTGACATTCTCAATCGTATCCGATGGTTCAACCTCAAGGGTGA 847431 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||||| ||||| | || || || ||||||||||| || Sbjct 847430 TGGTTTTACCCGTCAATGTTTTGACGAAGATTTGCATGTT 847391 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||||||||| || |||||||| || ||||| || || ||| || | || || Sbjct 621784 ACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 621843 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| |||||||| || | || |||||||| | ||| | | |||||||| | Sbjct 621844 AGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 621903 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || ||| || | | | | |||||| | ||| || || | |||||||| ||| Sbjct 621904 ATCTTTGCCTTAACATTTTCAATCGTGTCTGATGGTTCAACTTCAAGAGTGATGGTCTTG 621963 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || || || ||||||||||| Sbjct 621964 CCAGTCAAAGTTTTGACGAAGATTTGCAT 621992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||||||||| || |||||||| || ||||| || || ||| || | || || Sbjct 646030 ACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCTTCG 645971 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| |||||||| || | || ||||| || | || | | |||||||| | Sbjct 645970 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGG 645911 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 ||||| ||||| | | | ||||| | ||| || || | |||||||| ||| Sbjct 645910 ATTTTGGCTTTGACGTTTTCGATGGTGTCAGATGGTTCAACTTCAAGGGTGATGGTCTTG 645851 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || ||||||||||| Sbjct 645850 CCAGTCAAAGTCTTGACGAAGATTTGCAT 645822 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||||||||| || |||||||| || ||||| || || ||| || | || || Sbjct 646258 ACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 646199 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| |||||||| || | || |||||||| | || | | |||||||| | Sbjct 646198 AGTTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGG 646139 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || ||| || | || | | |||||| | ||| || || | |||||||| ||| Sbjct 646138 ATCTTTGCCTTAACATTCTCAATGGTGTCGGATGGTTCAACCTCAAGGGTGATGGTCTTG 646079 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || || || ||||||||||| Sbjct 646078 CCAGTCAAAGTTTTGACGAAGATTTGCAT 646050 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||||||||| || |||||||| || ||||| || || ||| || | || || Sbjct 646942 ACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 646883 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| |||||||| || | || |||||||| | ||| | | |||||||| | Sbjct 646882 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 646823 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || ||| || | | | | |||||| | ||| || || | |||||||| ||| Sbjct 646822 ATCTTTGCCTTAACATTTTCAATCGTGTCTGATGGTTCAACTTCAAGAGTGATGGTCTTG 646763 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || || || ||||||||||| Sbjct 646762 CCAGTCAAAGTTTTGACGAAGATTTGCAT 646734 >seq889 Length=890 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||||||||| || ||||||||||| ||||| || || ||| || | || || Sbjct 296 ACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 237 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| |||||||| || | || |||||||| | || | | |||||||| | Sbjct 236 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGG 177 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || ||||| | | | ||||| | ||| || || | ||||| || ||| Sbjct 176 ATCTTGGCTTTGACGTTTTCAATGGTGTCCGATGGTTCAACTTCAAGAGTGATAGTCTTG 117 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || ||||||||||| Sbjct 116 CCAGTCAAAGTCTTGACGAAGATTTGCAT 88 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543051445427920