Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq48 132 5e-26 seq55 95.1 1e-14 seq14265 87.8 2e-12 seq2 87.8 2e-12 >seq48 Length=1955607 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || || ||||||||||| ||||| |||| | Sbjct 646732 CCACCACGGAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTC 646673 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || || || ||||||||| ||||||| || ||||| || || || Sbjct 646672 AAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGA 646613 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| || ||| || ||||| | ||||| |||||| | |||||| Sbjct 646612 ATTCCTTCCTTATCTTGGATCTTTGCCTTGACGTTTTCGATGGTGTCAGATGGTTCGACT 646553 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || ||||| |||| |||||| || || || |||||| Sbjct 646552 TCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCATG 646505 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||||| | || || ||||||||||| ||||| |||| | Sbjct 645820 CCACCGCGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTC 645761 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || ||||||||| ||||||| || ||||| || || || Sbjct 645760 AAAGTGCGCCCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGA 645701 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| ||| || ||||| | ||| | |||||| | || ||| Sbjct 645700 ATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACT 645641 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| |||| |||||| || || || |||||| Sbjct 645640 TCAAGAGTGATAGTCTTGCCAGTCAAAGTTTTAACGAAGATTTGCATG 645593 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||||||||||||| | || |||||||| || || ||||||||| Sbjct 847623 GCACCACCACGAAGACGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCG 847564 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | || || ||| |||| || || |||||| ||||||| || |||||||| || Sbjct 847563 CTAAGAGTACGTCCATCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGC 847504 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || ||||| || || | | ||| | | ||| |||| | || | || |||| || Sbjct 847503 GGAATGCCTTCTTTAT-CTTGAATCTTTGCTTTGACATTCTCAATCGTATCCGATGGTTC 847445 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || | ||| | ||||| || |||| ||||| || || || |||||| Sbjct 847444 AACCTCAAGGGTGATGGTTTTACCCGTCAATGTTTTGACGAAGATTTGCATG 847393 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||||||||||||| | || |||||||| || || |||||||||| | || || | Sbjct 850878 CGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTAAGAGTACGTCCA 850819 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 || |||| || || |||||| ||||||| || |||||||| || || ||||| || || Sbjct 850818 TCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTT 850760 >seq55 Length=2529122 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | ||| | || || || || ||||| || || || | Sbjct 2062127 CCACCACGAAGACGGAGCACAAGATGAAGTGTGGATTCCTTCTGAATGTTATAGTCACTA 2062068 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || |||| || |||||||| ||||||| || |||||||| ||||| Sbjct 2062067 AGAGTACGACCGTCTTCTAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 2062008 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| ||| || ||||| | ||| | || || | ||||||| Sbjct 2062007 ATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATTGTATCTGATGGCTCGACT 2061948 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || ||||| || |||||||| || || || ||||| Sbjct 2061947 TCGAGAGTGATAGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 2061901 >seq14265 Length=158 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| || | |||||||| | || || ||||||||||| ||||| |||| | Sbjct 43 CCACCACGTAGACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTGTAGTCGCTC 102 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 | |||||| ||| || || || ||||||||| ||||||| || ||||| || || Sbjct 103 AAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGG 158 >seq2 Length=1318413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 146048 CCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACA 146107 |||||||||||| || || || || |||||||| || ||||| || | || | Sbjct 923188 CCTTGATGAGATGATGATTAACAACTTGAAACTCTCCACTAAGAACACGTCGGTTGTAAA 923129 Query 146108 CGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGG 146167 ||||||| ||| | || ||||| || ||||| ||||| || || ||||| | ||| | Sbjct 923128 CGTTGCTTGTGTATGGTTCGAAGCTTTCATTGTTGCCGAGAATTTGAGCCGTTGAAGCAG 923069 Query 146168 TAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTG-AATCTTTTCCCGT 146226 | ||||| ||||||| ||| || || | ||||| || ||| | ||| || ||| Sbjct 923068 TCGGCATTGGTGCCACCAACAATGAATTACGAACGCCATG-CTTAGCAATTTTCTCCTTC 923010 Query 146227 AGTTTGGACCAATTCCA 146243 | ||||||||||||| Sbjct 923009 AAAGTGGACCAATTCCA 922993 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 146048 CCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACA 146107 |||||||||||| || || || || |||||||| || ||||| || | || | Sbjct 931305 CCTTGATGAGATGATGATTAACAACTTGAAACTCTCCACTAAGAACACGTCGGTTGTAAA 931246 Query 146108 CGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGG 146167 ||||||| ||| | || ||||| || ||||| ||||| || || ||||| | ||| | Sbjct 931245 CGTTGCTTGTGTATGGTTCGAAGCTTTCATTGTTGCCGAGAATTTGAGCCGTTGAAGCAG 931186 Query 146168 TAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTG-AATCTTTTCCCGT 146226 | ||||| ||||||| ||| || || | ||||| || ||| | ||| || ||| Sbjct 931185 TCGGCATTGGTGCCACCAACAATGAATTACGAACGCCATG-CTTAGCAATTTTCTCCTTC 931127 Query 146227 AGTTTGGACCAATTCCA 146243 | ||||||||||||| Sbjct 931126 AAAGTGGACCAATTCCA 931110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475359558431120