Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq48 136 9e-27 seq55 105 2e-17 >seq48 Length=1955607 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || | ||| || |||||||||| ||||||||| |||||| Sbjct 621772 CGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTCAAAGTG 621831 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||||||||||| |||||||| | ||| |||||||| || ||||||| Sbjct 621832 CGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGTGGAATTCCT 621891 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || |||||| ||| || ||| | ||||||| || ||| || || | Sbjct 621892 TCCTTGTCTTGGATCTTTGCCTTAACATTTTCAATCGTGTCTGATGGTTCAACTTCAAGA 621951 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | |||||| || || ||||| Sbjct 621952 GTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTG 621989 >seq55 Length=2529122 Score = 105 bits (116), Expect = 2e-17 Identities = 160/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||| || || || || ||||| || | ||| |||||| | ||| Sbjct 2062121 CGAAGACGGAGCACAAGATGAAGTGTGGATTCCTTCTGAATGTTATAGTCACTAAGAGTA 2062062 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| | |||||||| || ||||| | ||| ||||| || ||| ||| ||| Sbjct 2062061 CGACCGTCTTCTAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCT 2062002 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || ||| | || |||| || || || || | Sbjct 2062001 TCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATTGTATCTGATGGCTCGACTTCGAGA 2061942 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| ||||| || |||||||||||||| || ||||| |||||| Sbjct 2061941 GTGATAGTCTTGCCAGTGAGAGTTTTCACGAAGATTTG---CATTTT 2061898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178562661477121