Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq37 107 1e-18 seq48 98.7 7e-16 >seq37 Length=1894237 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| || | ||| || |||||||||||||| ||||||||| || || || ||| Sbjct 798483 GCCGCCACGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCGCT 798542 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| |||| || | ||| || || | || || ||||| ||||| || | ||| Sbjct 798543 CAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGG 798602 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| || ||| |||| || | | ||||| | ||| || Sbjct 798603 AATTCCTTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATGGTGTCAGATGGTTCAAC 798662 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||| || || || || || |||||||| |||||||| |||||| Sbjct 798663 CTCAAGAGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCATG 798711 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || |||||||||||||| ||| ||||| || || || ||| Sbjct 798711 GCCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCGCT 798770 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| |||| || | ||| || || | || || ||||| |||||||| | ||| Sbjct 798771 CAAAGTGCGGCCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGG 798830 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| || ||| || | | | | ||||||| ||| || Sbjct 798831 AATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCAAC 798890 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||| || || || || || |||||||| |||||||| |||||| Sbjct 798891 TTCAAGAGTGATAGTCTTGCCAGTCAAAGTTTTAACGAAGATTTGCATG 798939 >seq48 Length=1955607 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || |||||||||||||| ||||||||| || || || ||| Sbjct 645821 GCCACCGCGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCT 645762 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| |||| || | ||| || || | || || ||||| ||||| || | ||| Sbjct 645761 CAAAGTGCGCCCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGG 645702 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| || ||| || | | | | ||||||| ||| || Sbjct 645701 AATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCAAC 645642 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||| || || || || || |||||||| |||||||| |||||| Sbjct 645641 TTCAAGAGTGATAGTCTTGCCAGTCAAAGTTTTAACGAAGATTTGCATG 645593 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| || | ||| || |||||||||||||| ||| ||||| || || || ||| Sbjct 646961 GCCGCCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCT 646902 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| |||| || | ||| || || | || || ||||| ||||| || | || Sbjct 646901 CAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGTGG 646842 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| || ||| |||| | | | ||||||| ||| || Sbjct 646841 AATTCCTTCCTTGTCTTGGATCTTTGCCTTAACATTTTCAATCGTGTCTGATGGTTCAAC 646782 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||| || || || || || |||||||| |||||||| |||||| Sbjct 646781 TTCAAGAGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCATG 646733 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || |||||||||||||| ||||||||| || || || ||| Sbjct 647189 GCCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCGCT 647130 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| |||| || | ||| || || | || || ||||| ||||| || | ||| Sbjct 647129 CAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGG 647070 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| || ||| |||| || | | ||||| | ||| || Sbjct 647069 AATTCCTTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGATGGTTCAAC 647010 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCG 39723 || | || || || || || || |||||||| |||||||| |||||| || Sbjct 647009 CTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCATGCCG 646958 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| || | ||| || |||||||||||||| ||| ||||| || || || ||| Sbjct 646049 GCCGCCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCT 645990 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| |||| || | ||| || || | || || ||||| |||||||| | || Sbjct 645989 CAAAGTGCGGCCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGAGG 645930 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| ||||| ||| | | | | ||||| | ||| || Sbjct 645929 AATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTTTCGATGGTGTCAGATGGTTCAAC 645870 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | || || || || || || ||||| || |||||||| |||||| Sbjct 645869 TTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTGCATG 645821 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || |||||||||||||| ||| ||||| || || || ||| Sbjct 646277 GCCACCACGGAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCT 646218 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| |||| || | ||| || || | || || ||||| ||||| || | || Sbjct 646217 CAAAGTGCGACCATCTTCGAGTTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGAGG 646158 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| || ||| |||| || | | ||||| | ||| || Sbjct 646157 AATTCCTTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGATGGTTCAAC 646098 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCG 39723 || | || || || || || || |||||||| |||||||| |||||| || Sbjct 646097 CTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCATGCCG 646046 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| || | ||| || |||||||||||||| ||||||||| || || || ||| Sbjct 646505 GCCGCCACGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCGCT 646446 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| |||| || | ||| || || | ||||| ||||| ||||| || | || Sbjct 646445 CAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAAATCAAACGTTGCTGGTCTGGTGG 646386 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| || || |||| | | | ||||| | ||| || Sbjct 646385 AATTCCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCAGATGGTTCGAC 646326 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | || || || || || || || ||||| |||||||| |||||| Sbjct 646325 TTCAAGGGTGATGGTCTTGCCGGTCAATGTTTTGACGAAGATTTGCATG 646277 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||||||||| ||| ||||| || || || ||| | Sbjct 621766 CCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTC 621825 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| || | || || || | || || ||||| ||||| || | || Sbjct 621826 AAAGTGCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGTGGA 621885 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| || ||| |||| | | | ||||||| ||| || Sbjct 621886 ATTCCTTCCTTGTCTTGGATCTTTGCCTTAACATTTTCAATCGTGTCTGATGGTTCAACT 621945 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||| || || || || || |||||||| |||||||| |||||| Sbjct 621946 TCAAGAGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCATG 621993 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTT--TCTTTTTGTATATTATAATCGG 39550 || || || | ||||| |||||||| ||||| | ||||| || || || |||||| Sbjct 847620 CCACCACGAAGACGCAACACCAAATG--AAGTGTTGACTCTTTCTGGATGTTGTAATCGC 847563 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 | | ||| |||| || ||||| || || | || || ||||| |||||||| | | Sbjct 847562 TAAGAGTACGTCCATCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCG 847503 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | ||||||||| || || ||| ||| | || | | || || | ||| | Sbjct 847502 GAATGCCTTCTTTATCTTGAATCTTTGCTTTGACATTCTCAATCGTATCCGATGGTTCAA 847443 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGT 39721 | || | || || ||||||||||| || ||||| |||||||| ||||||| Sbjct 847442 CCTCAAGGGTGATGGTTTTACCCGTCAATGTTTTGACGAAGATTTGCATGT 847392 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || |||||||||||||| ||||||||| || || || ||| Sbjct 646733 GCCACCACGGAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCT 646674 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| |||| || | ||| || || | || || ||||| ||||| || | ||| Sbjct 646673 CAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGG 646614 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || || ||| || | | | | ||||| | ||| || Sbjct 646613 AATTCCTTCCTTATCTTGGATCTTTGCCTTGACGTTTTCGATGGTGTCAGATGGTTCGAC 646554 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCG 39723 || | || || || || || || |||||||| |||||||| |||||| || Sbjct 646553 TTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCATGCCG 646502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347268997747379