Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq51 114 1e-20 seq48 96.9 3e-15 >seq51 Length=676905 Score = 114 bits (126), Expect = 1e-20 Identities = 174/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 9010 CCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTAACCTCTACCAGTGTGGGA 9069 ||||| ||||| |||| || | || |||||| || | ||| ||| | | | ||| Sbjct 449619 CCAAAGCCTCCAGCTCCACGTTGCGTTTCAGTCAATGACGGAACTTCTTCGATAATTGGA 449678 Query 9070 TAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCT 9129 ||| | ||| ||||||| ||||| || ||||| || || || || | | |||| || Sbjct 449679 TAATAAATTCGTTCACAGATTAACTGTGCAATTCTATCACCTTTGCTTATAGCAAATTCG 449738 Query 9130 GTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACA 9189 ||||||||||| |||| || || || ||||| || | ||||| || || || || Sbjct 449739 AGATCGGAATGATTAAACATTACAACGCCAACGTTGCCTCGATAATCTTCGTCAATGACG 449798 Query 9190 CCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCG 9249 |||||||| || || || |||| ||| | |||| ||||| || || || | ||||| Sbjct 449799 CCAGCACCAACATCAATAAAGTTCTTTGCTGCTAAGCCAGATCGTGGAGCAACACGACCA 449858 Query 9250 TAGCATCC 9257 || ||||| Sbjct 449859 TAACATCC 449866 >seq48 Length=1955607 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||||||| || || |||||| || || |||||||| ||| | || Sbjct 847611 AGACGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTAAGAGTACGT 847552 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || || |||||||| || || |||| || || ||||| | |||| ||| || Sbjct 847551 CCATCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGGAATGCCTTCT 847492 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||||| ||| ||| | | | || || | || ||||| | || Sbjct 847491 TTATCTTGAATCTTTGCTTTGACATTCTCAATCGTATCCGATGGTTCAACCTCAAGGGTG 847432 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| |||||||| ||||| || || || ||||| Sbjct 847431 ATGGTTTTACCCGTCAATGTTTTGACGAAGATTTGCAT 847394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380827276066449