Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq55 114 2e-20 seq48 98.7 2e-15 seq43 87.8 3e-12 >seq55 Length=2529122 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||||||| ||||| ||||| || || | || ||||| ||||| || ||||| || Sbjct 2062055 TCTTCTAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTG 2061996 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | |||| ||| ||||| || | ||| ||||| ||||| ||| Sbjct 2061995 TCTTGGATCTTAGCCTTGACATTTTCAATTGTATCTGATGGCTCGACTTCGAGAGTGATA 2061936 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || ||||| || || ||||||||||| Sbjct 2061935 GTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTT 2061898 >seq48 Length=1955607 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| |||||||| || || || || || || | || ||||| || || || |||||||| Sbjct 847549 ATCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGGAATGCCTTCTTT 847490 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || || | ||| | ||| ||| ||||| || | ||||| || || || || Sbjct 847489 ATCTTGAATCTTTGCTTTGACATTCTCAATCGTATCCGATGGTTCAACCTCAAGGGTGAT 847430 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||||| || | ||||| || || |||||||| || Sbjct 847429 GGTTTTACCCGTCAATGTTTTGACGAAGATTTGCATGTT 847391 >seq43 Length=2293527 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 146169 AAGATTGGCCACCATCTATTTCACAAAAACCAGAAGACTTAGCAGAAGCTGGATTCTTTT 146228 ||||||||||| | | || |||||| ||| || | ||| || ||||| || | | Sbjct 162655 AAGATTGGCCAAAAACGATGCGACAAAAGCCACAACAATTAAGCGATGCTGGCTTTTACT 162714 Query 146229 ATACGGGATTAAGCGATAAAGTTAAATGCTTCTATTGTGATGGCGGATTAAAAGATTGGA 146288 |||| ||| | ||||| |||| ||||| ||||| ||| |||||||| |||||| Sbjct 162715 ATACAGGAAAAGGCGATCGAGTTTGCTGCTTTAGTTGTGGTGGTGGATTAAAGGATTGGG 162774 Query 146289 AAGCGGGTGAATTACCTTGGAAAGAACACGCTCGTTGGTATGATAAATGTGAATATGTAA 146348 ||| | ||| || ||| || |||| || ||||||| |||||||||||| | | Sbjct 162775 AAGAGAATGACGATCCATGGGAACAACATGCGATGTGGTATGGAAAATGTGAATATCTTA 162834 Query 146349 AAATAGTAAAAGGTTTAGATTTTATT 146374 || | | ||||| || |||||| Sbjct 162835 AACTGATGAAAGGCGCTGACTTTATT 162860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899387168906160