Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq48 104 3e-17 seq43 98.7 1e-15 seq55 87.8 3e-12 >seq48 Length=1955607 Score = 104 bits (114), Expect = 3e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | ||||||||||| || ||||| || || | || || ||| Sbjct 847391 AACATGCAAATCTTCGTCAAAACATTGACGGGTAAAACCATCACCCTTGAGGTTGAACCA 847450 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| || || ||| || || ||||||||||||||||| || ||||| Sbjct 847451 TCGGATACGATTGAGAATGTCAAAGCAAAGATTCAAGATAAAGAAGGCATTCCGCCAGAT 847510 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT-TTATCAGATTA 155998 || ||| | ||||| | || |||||||| | || ||| | ||| ||| | ||||| Sbjct 847511 CAGCAACGTTTGATCTTCGCTGGTAAGCAATTAGAGGATGGACGTACTCTTAGC-GATTA 847569 Query 155999 TAATATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || |||||| | || |||||||| ||||| Sbjct 847570 CAACATCCAGAAAGAGTCAACACTTCATTTGGTGTT 847605 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||||||||| || || || || || | ||||||||| ||| Sbjct 622220 ATGCAAATCTTCGTCAAAACATTGACCGGCAAGACCATCACCCTTGAAGTCGAACCATCT 622161 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || || || ||||| || ||||| || || ||||| || Sbjct 622160 GACACGATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAG 622101 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | ||||||| || || ||||| ||||||||| Sbjct 622100 CAACGTTTGATTTTCGCTGGAAAGCAACTCGAAGAT 622065 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||||||||| || || || || || | ||||||||| ||| Sbjct 646278 ATGCAAATCTTCGTCAAAACATTGACCGGCAAGACCATCACCCTTGAAGTCGAACCATCT 646337 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || || || ||||| || ||||| || || ||||| || Sbjct 646338 GACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAG 646397 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | ||||||| || || ||||| ||||||||| Sbjct 646398 CAACGTTTGATTTTCGCTGGAAAGCAACTCGAAGAT 646433 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| |||||||| || || || || | ||||| ||| || Sbjct 621992 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACTCTTGAAGTTGAACCATCA 621933 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || || || ||||| || ||||| || || ||||| || Sbjct 621932 GACACGATTGAAAATGTTAAGGCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAG 621873 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | ||||| | || || ||||||||||||||| Sbjct 621872 CAACGTTTGATCTTCGCTGGAAAGCAGCTCGAAGAT 621837 >seq43 Length=2293527 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 18532 AAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAAC 18591 ||||||||| || ||||| ||||| || || ||||||| | ||| || |||||||| || Sbjct 2198008 AAATCTTTCAACTAAATTTTCATTCACGATGCCGTCAGATGCTGCAAAGAATGCCAATAC 2198067 Query 18592 ATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTTGA 18651 || | || || || ||| |||| || || ||||| | ||| | ||| ||||| Sbjct 2198068 ATGTGAGATAAAGTGACGTTCGGTATCTTTAAGGCCATTCCAATGATCAAGATCCTTTGA 2198127 Query 18652 TAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTT 18695 |||||||||||||| |||||||| || | ||| |||| || Sbjct 2198128 CAGATCAACTTCTTCAACCGTCCAAAATGACGCTTCCGCCTATT 2198171 >seq55 Length=2529122 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | ||||| | ||||| || ||||| || | |||||||| Sbjct 2061898 AAAATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACTATCACTCTCGAAGTCGAGCCA 2061957 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| ||| || || ||| || ||||| || ||||| || |||||||| Sbjct 2061958 TCAGATACAATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATTCCTCCAGAT 2062017 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || ||| | ||||| | ||| || ||||| | ||||| Sbjct 2062018 CAGCAACGTTTGATCTTTGCTGGAAAGCAATTAGAAGA 2062055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731654606570800