Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq43 138 2e-27 seq48 132 9e-26 seq55 93.3 8e-14 >seq43 Length=2293527 Score = 138 bits (152), Expect = 2e-27 Identities = 511/815 (63%), Gaps = 74/815 (9%) Strand=Plus/Plus Query 49602 AATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAATAATCTATCGGCT 49661 || ||||| || || || || |||||| || |||| || | | | ||| || Sbjct 2197356 AAAGGATTCTTTGTGTTGTAGATTTTTTCGACTCCCAATTCACCGAGAAGACGATCAGCA 2197415 Query 49662 ACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTTAAATGGTAAT 49721 ||||| |||| ||||| ||||| | ||| |||||||| ||||| | |||| || || Sbjct 2197416 ACAAACTCAATGTATTGAGACATCAGTTCGCAATTCATGCCCAACATGTTAACAGGCAAG 2197475 Query 49722 GCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataattatatta 49781 ||||| | ||||||| ||| |||| ||||||| | ||| || | || Sbjct 2197476 GCATCGGTGAGGAATTCTTGTTCAATTTTAACAGCTTCTGAAATGATTTCGACAATTCGT 2197535 Query 49782 ttttttgataatttatatttaatatgattcgcatatattaaACATGCAAAATCAGTATGT 49841 | ||||| | ||| | || |||| || | | || ||||| ||||||||| ||| Sbjct 2197536 TCTTTTGGTGGTTTCTGGACAAGATGA--CGGA-ACATCAAACAAGCAAAATCACAATGC 2197592 Query 49842 AAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTC 49901 || || ||||| | || || |||||||| ||| || ||||| ||||| ||||| | Sbjct 2197593 AAGCCTTCGTCACGTGAAATCAATTCATTGGAAAATGTCAATCCCGGCATCAATCCACGT 2197652 Query 49902 TTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCA 49961 || |||| ||||||||| | |||||||| | | ||||| || || || || ||| Sbjct 2197653 TTCTTAATCCAAAATATGGCAGCAAAACTTCCACTGAAGAAAATTCCTTCAACTGCTGCA 2197712 Query 49962 AATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT-ATCCAATTTATAGCCCA 50020 ||||| || |||||| | ||||| | || | | || | ||||| || || ||||| Sbjct 2197713 AATGCAATAATTCTTTCCCCAAAGTTGGCATTCTTA-CTGCTGATCCAGTTAATTGCCCA 2197771 Query 50021 ATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA---TTCAttttt 50077 || || || || || | | | || | |||| | ||| || ||||| |||| | Sbjct 2197772 GTCAGCCTTCTTCTTCACACATGGCAATGTTTCGACAGCGTTGAATAAAAATTCACGCTC 2197831 Query 50078 ttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGAATGTACAGC 50137 || || | || ||||||||||||||||||||| Sbjct 2197832 TT---TGGAGTTTCGAATGTAAGTTTCAATAAGCAAGGAATACATTTCAGAATGTACATT 2197888 Query 50138 TTCCATAGCTATTTGAAA------------------------------TGAAT------- 50160 ||||||||||||||||| ||||| Sbjct 2197889 CTCCATAGCTATTTGAAAACCATAAAAGCAGCGTGCTTCAGTAACCTGTGAATCAGAATG 2197948 Query 50161 ---------------AAAATTGTCTTGCTTCTGAATA-------CTGAACTTC--GGAAA 50196 |||||||| || || | || | ||||||||| || | Sbjct 2197949 ATGAGAATAAACAGTAAAATTGTATTCATTTTCAAAAAATTTACCTGAACTTCCTGGCTA 2198008 Query 50197 AGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAA 50256 | ||| |||||||||||| ||| || || || ||||||||||| |||||||| || | Sbjct 2198009 A--ATCTTTCAACTAAATTTTCATTCACGATGCCGTCAGATGCTGCAAAGAATGCCAATA 2198066 Query 50257 CGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGATCGTTTG 50316 | | | ||||| || ||| ||||||| | | |||| |||||||| |||| Sbjct 2198067 CATGTGAGATAAAGTGACGTTCGGTATCTTTAAGGCCATTCCAATGATCAAGATCCTTTG 2198126 Query 50317 ATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351 | | ||| |||||||| | ||||||||||| ||| Sbjct 2198127 ACAGATCAACTTCTTCAACCGTCCAAAATGACGCT 2198161 >seq48 Length=1955607 Score = 132 bits (146), Expect = 9e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| || || ||||| | || | |||||| ||| || ||||| | Sbjct 847621 ACCACCACGAAGACGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATC-GC 847563 Query 192369 TAAT-GTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 ||| || ||| |||| || ||||| |||||||| ||||| || | || ||||| || | Sbjct 847562 TAAGAGTACGTCCATCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCG 847503 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || |||||||||||||| || || ||| ||||| || | ||| || | ||| | Sbjct 847502 GAATGCCTTCTTTATCTTGAATCTTTGCTTTGACATTCTCAATCGTATCCGATGGTTCAA 847443 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||||||||| || |||||||| | || || ||||| || Sbjct 847442 CCTCAAGGGTGATGGTTTTACCCGTCAATGTTTTGACGAAGATTTGCATGTT 847391 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | ||| || ||||| ||||| || | || || || ||||| |||||||||| Sbjct 647346 CATCTTCGAGTTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTT 647287 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | ||||| ||||| ||| || || || | || || | ||| ||||| || || | Sbjct 647286 TGTCTTGGATTTTGGCTTTGACGTTTTCGATGGTGTCAGATGGTTCGACTTCAAGGGTGA 647227 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| || ||||| || ||||| | || || ||||| Sbjct 647226 TGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 647190 >seq55 Length=2529122 Score = 93.3 bits (102), Expect = 8e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 || |||||||| | |||||| | || | ||| | || | || || || ||||| Sbjct 2062133 ATGATACCACCACGAAGACGGAGCACAAGATGAAGTGTGGATTCCTTCTGAATGTTATAG 2062074 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||| | || || | || || ||||| || ||||||||||| || | || ||||| Sbjct 2062073 TCACTAAGAGTACGACCGTCTTCTAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCT 2062014 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || || ||||| || ||||| || ||| || ||||| || | |||||| | Sbjct 2062013 GGAGGAATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATTGTATCTGATGGC 2061954 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| || || || ||||| | ||||| | || || |||||||| Sbjct 2061953 TCGACTTCGAGAGTGATAGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTT 2061898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984180261835050