Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq43 163 5e-35 seq48 120 5e-22 >seq43 Length=2293527 Score = 163 bits (180), Expect = 5e-35 Identities = 311/456 (68%), Gaps = 3/456 (1%) Strand=Plus/Plus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 |||||| || || |||||| |||||||| ||||||||||| || || | || || | Sbjct 2197283 TTTTTGATACTCTCCAACTTTCTTTTCGAAGAAGTTTGTTTTACCCTCAAGCGAGATGAG 2197342 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAA 38950 | ||| || || ||||| || || || || |||||| || |||| || | Sbjct 2197343 CTCCATGAAGCTGAAAGGATTCTTTGTGTTGTAGATTTTTTCGACTCCCAATTCACCGAG 2197402 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 | | ||| || ||||| |||| ||||| |||| | ||| |||||||| ||||| | Sbjct 2197403 AAGACGATCAGCAACAAACTCAATGTATTGAGACATCAGTTCGCAATTCATGCCCAACAT 2197462 Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 |||| || || ||||| | ||||||| ||| |||| ||||||| | ||| || Sbjct 2197463 GTTAACAGGCAAGGCATCGGTGAGGAATTCTTGTTCAATTTTAACAGCTTCTGAAATGAT 2197522 Query 39071 cataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATGC 39130 | || | ||||| | ||| | || |||| || | | | ||||| || Sbjct 2197523 TTCGACAATTCGTTCTTTTGGTGGTTTCTGGACAAGATGA--CGGA-ACATCAAACAAGC 2197579 Query 39131 AAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 39190 |||||| ||| || |||||||| | || || |||||||| ||| || ||||| || Sbjct 2197580 AAAATCACAATGCAAGCCTTCGTCACGTGAAATCAATTCATTGGAAAATGTCAATCCCGG 2197639 Query 39191 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 39250 ||| ||||| | || |||| ||||||||| | |||||||| | | ||||| || || Sbjct 2197640 CATCAATCCACGTTTCTTAATCCAAAATATGGCAGCAAAACTTCCACTGAAGAAAATTCC 2197699 Query 39251 CTCCACACACGCAAATGCTATTATTCTTGCTCCAAA 39286 || || |||||||| || |||||| | ||||| Sbjct 2197700 TTCAACTGCTGCAAATGCAATAATTCTTTCCCCAAA 2197735 Score = 96.9 bits (106), Expect = 6e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 39501 AATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACA 39560 |||| |||||||||||| ||| || || || ||||||||||| |||||||| || ||| Sbjct 2198009 AATCTTTCAACTAAATTTTCATTCACGATGCCGTCAGATGCTGCAAAGAATGCCAATACA 2198068 Query 39561 TATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGAT 39620 | | ||||| || ||| ||||||| | | |||| |||||||| ||||| Sbjct 2198069 TGTGAGATAAAGTGACGTTCGGTATCTTTAAGGCCATTCCAATGATCAAGATCCTTTGAC 2198128 Query 39621 AAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 | ||| |||||||| | |||||||| || ||| Sbjct 2198129 AGATCAACTTCTTCAACCGTCCAAAATGACGCT 2198161 >seq48 Length=1955607 Score = 120 bits (132), Expect = 5e-22 Identities = 179/250 (72%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 171825 CTTTTTA-GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTT 171883 ||| ||| ||||| | |||||| | ||| || || || ||||| | || | |||||| Sbjct 847639 CTTCTTACGTTTCTTGGCACCACCACGAAGACGCAACACCAAATGAAGTGTTGACTCTTT 847580 Query 171884 AGAAATATTATAATCTGATAA-AGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTA 171942 || || ||||| | ||| || ||| | || || ||||| |||||||| || || | Sbjct 847579 CTGGATGTTGTAATC-GCTAAGAGTACGTCCATCCTCTAATTGCTTACCAGCGAAGATCA 847521 Query 171943 ATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTA 172002 | | || || || || || || |||||||||||||| || || ||| ||||| | Sbjct 847520 AACGTTGCTGATCTGGCGGAATGCCTTCTTTATCTTGAATCTTTGCTTTGACATTCTCAA 847461 Query 172003 TAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATA 172062 | ||||| || | ||| || || || || ||||||||||| || |||||||| | ||| | Sbjct 847460 TCGTATCCGATGGTTCAACCTCAAGGGTGATGGTTTTACCCGTCAATGTTTTGACGAAGA 847401 Query 172063 TCTGCATTTT 172072 | ||||| || Sbjct 847400 TTTGCATGTT 847391 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||| || ||||| || || || | || ||||| ||||| ||||||||||| Sbjct 647344 TCTTCGAGTTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTG 647285 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| ||||| ||| || || || || || || | ||| ||||| || || ||| Sbjct 647284 TCTTGGATTTTGGCTTTGACGTTTTCGATGGTGTCAGATGGTTCGACTTCAAGGGTGATG 647225 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||| | ||| || ||||| Sbjct 647224 GTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 647190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904867140665400