Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq64 192 2e-43 seq40 129 2e-24 seq54 84.2 6e-11 >seq64 Length=2694604 Score = 192 bits (212), Expect = 2e-43 Identities = 776/1204 (64%), Gaps = 39/1204 (3%) Strand=Plus/Minus Query 155325 AAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCAGATGTAAATGCG 155384 |||||||||||||| || || | |||||| | | | | || || | ||| ||| | Sbjct 2451355 AAATAAATTGTCTCGAAAATCTGTTTATTAAGTTTACTTGCTTCGGCTGATTCAAAAGGC 2451296 Query 155385 ATATCCATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGAT-- 155442 || |||| ||| ||||| ||||||||||| ||||||||||| || | ||| |||| Sbjct 2451295 ATTCTCATCATGATAAATGCATCGGCTAAACCTTGAACTCCAATTCCAATTGGTCGATGA 2451236 Query 155443 -GCCTGTAATTGCTCCTGCTTGTCTTCTTGT-TTGGGTAAAAATTCACATCAATAATGTT 155500 || ||| | | | | || ||||| || |||| ||||| |||||||| || || || Sbjct 2451235 CGCATGT--TGGAT--TTTTTAGCTTCTGGTATTGGATAAAAGTTCACATCGATGATTTT 2451180 Query 155501 ATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATG--TT 155558 ||| | |||| | | | | ||||| || || || || || | ||| | | | Sbjct 2451179 ATTCAGATTTCTTGCTACAATCTTGGCAACTTCCTTCAACTTTTCAAAATCATACGAAAT 2451120 Query 155559 TTATCC-TCATTT---------ACAAACATACCAAGACCAATAGACGCCAGATTACATAC 155608 || ||| |||||| |||||||| ||| | || || |||| |||||| || Sbjct 2451119 TTCTCCTTCATTTTTCGTCACAACAAACATGTTTAGAGCTATCGAAGCCAAATTACAAAC 2451060 Query 155609 CGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGAT 155668 || || || | | | ||||| | |||||| ||| || || |||| | || Sbjct 2451059 AGCTACTTCATTTTTATTGGAATATTCAAGAATCTCTGTGCAAAGATTTGAACAATGAAT 2451000 Query 155669 GGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGG 155728 || || | ||||| ||||| ||||| | || || ||||| ||||| || ||||| || Sbjct 2450999 CGTTCCAAGATTCTGTTGGTTTGATTTTCGATTGCATGCATCTTTGTAAAGCATGTAAGG 2450940 Query 155729 GGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTG 155788 ||||| || |||| || | || | ||| | ||| || || | || |||||||| Sbjct 2450939 CGTTCCCGTTTCCACTTGAGACTCAATAATGGCAAACCAAAGATCTTGTGCTTTAATTTG 2450880 Query 155789 CTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTA 155848 | |||| |||||| ||||||||| || || | | || || || | Sbjct 2450879 ACGAATATATCGGCCTTCACTTTCATATTTCTCGTAAAGTTTATCAAATTCTTCTCCCCA 2450820 Query 155849 ACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGAT 155908 | ||| || ||| || | || | ||| || | || ||||| ||| ||||| Sbjct 2450819 AACTTCAAACAATCCTGGACTGTTGTAGGGACACATCAAAGACCACATTCCATTACTCTC 2450760 Query 155909 TACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTT-- 155965 ||||| |||||| | ||| ||||| | |||| || | ||||| || ||| Sbjct 2450759 AACACGACGCATAAACAAATCTGGAATCCAAAGACCATAAAACATATCCCTGGCTCTTAC 2450700 Query 155966 TGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTG 156025 | ||||| || |||| ||| ||| || | | || || || || ||| Sbjct 2450699 TTTTTCCTC-TC-CCGT-ATTTTTCTTAAGATTCAGAAACTCGAAGATGTCGCCATGCCA 2450643 Query 156026 TGGCTCCAGATACATAGCAAAACTACCATTCC---TCTTGCCACCCTGATCTACATACCG 156082 ||| || ||||| || || ||| ||| | | || |||| ||| || ||||| | Sbjct 2450642 TGGTTCAAGATAAATGGCGAAAGCTCCAGGACGTTTATTACCACTCTGGTCAACATAACA 2450583 Query 156083 AGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142 ||| || || ||||| || | | |||||| | || |||||| | | ||||||| || || Sbjct 2450582 AGCGGTGTTGTTGAATACTCGCAACATAGGGACAAGACCATTAGCAATGCCATTTGTGCC 2450523 Query 156143 GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCA 156202 ||| | || | |||| ||||| | | |||||| ||||| | | Sbjct 2450522 TGCAATGTAACTTCCCCTAGCTCGAATGCAATGAACGTTCAATCCAATTCCACCAGCAGA 2450463 Query 156203 TTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTC 156262 ||| || |||| |||| | | || | ||||| |||||| |||||||| || Sbjct 2450462 TTTGCTGATGAGAGCACATTGGGTGAGTGTGTGGAAAACACCTTCGATAGAATCCTCCGA 2450403 Query 156263 CATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGT 156322 |||||| |||||| | || || ||||||||||| | |||| |||| || ||||| Sbjct 2450402 CATTGAGAGTAGAAAACAAGACGATAATTGAGGTCTTCTTGTTGCAGCAGCAAAAAGTGT 2450343 Query 156323 AGGTGTTGCATGAATAAA--ATACTTATTAGACATATAATCGTATGTCTCCTTAAT--CT 156378 || | ||||||| | || || || | | | ||| ||| ||| || || ||| || Sbjct 2450342 TGGCGATGCATGAGTGAAGTATCGTTGTGATA-ATA-AATTGTAAGTTTC---AATTGCT 2450288 Query 156379 TC-TCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGC 156437 | | || | | || ||||| | ||||| || | |||| |||| || ||||| | | Sbjct 2450287 GCATTAATGTCTGCACCATGAATTCCGATAGCTACTCGCATCAACATGTGTTGAGGTCTC 2450228 Query 156438 TCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAA 156497 || ||||| || | |||| || | || ||||||| ||||| || |||||| Sbjct 2450227 TCGACAATTTTCCCTTTAATTTTCAACAAATAACTTCGTTCCAATGTTTTGAATCCGAAA 2450168 Query 156498 TAAT 156501 |||| Sbjct 2450167 TAAT 2450164 >seq40 Length=1500142 Score = 129 bits (142), Expect = 2e-24 Identities = 152/203 (75%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || |||||||| ||||||||||| ||||||||||| ||||| ||| | || || ||| Sbjct 430904 ATTGTCATACGTGATGGAATAGCATGTGGATTGATGATAATGTCTGGTGTAAGACCTTCA 430963 Query 251905 GCAGTGAAGGGCATATCCTTTTCCT--CAATAATGT-TTCCAATAGTTCCCTTTTGTCCG 251961 || || ||||| || ||||| | ||| || ||||| |||||| || ||||| Sbjct 430964 CATGTAAATGGCATGTC---TTCCTGTCGATATTGAATTCCACAAGTTCCTTTCTGTCCA 431020 Query 251962 TGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTA 252021 ||||| ||| |||||||||||||| ||| |||||| ||||| ||||| |||| Sbjct 431021 TGACGCGAAGCAAACTTATCACCAATTTGAGGTATACGAACAGAACGAACGCGAATCTTA 431080 Query 252022 CAGAAGTTGTAACCATCACCGTT 252044 || || |||||||| |||| ||| Sbjct 431081 CAAAACTTGTAACCTTCACTGTT 431103 >seq54 Length=4029443 Score = 84.2 bits (92), Expect = 6e-11 Identities = 88/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 219866 AAGTGTAAAGAAAATAAATGTACTTATTATCAATTACAAACACGTAGTGCTGATGAGTCT 219925 || ||||| |||| | || || ||| |||| ||||||||||| |||||||||| | Sbjct 2108936 AAATGTAAGAAAAAGGATTGCACATATAATCAGCTACAAACACGTTCTGCTGATGAGCCC 2108877 Query 219926 ATGACTACGTTTGTAACTTGTATTCCTTGTGGTAATAGATGGAAG---TGTTAAA 219977 ||||| || ||||| | |||| | | ||||||||| |||||||| ||||||| Sbjct 2108876 ATGACAACTTTTGTTATGTGTAATGCATGTGGTAATCGATGGAAGTTCTGTTAAA 2108822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471369485354131