Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq40 96.9 4e-15 seq44 91.5 2e-13 >seq40 Length=1500142 Score = 96.9 bits (106), Expect = 4e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGG 193498 ||||||||| |||| || ||||| ||| ||| | |||| | | |||||||||||||| Sbjct 431058 CGTATACCTCAAATTGGTGATAAGTTTGCTTCGCGTCATGGAC-AGAAAGGAACTTGTGG 431000 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 || ||| ||| ||||| |||||||||||| | |||| | |||||| ||||| Sbjct 430999 AATTCAATATCGACAGGAAGACATGCCATTTACATGTGAAGGTCTTACACCAGACATTAT 430940 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATT 193595 || |||||| || ||||||||| | ||||| ||| Sbjct 430939 CATCAATCCACATGCTATTCCATCACGTATGACAATT 430903 >seq44 Length=1560997 Score = 91.5 bits (100), Expect = 2e-13 Identities = 90/115 (78%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 23053 ATCATGGGGATGAATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCtttttttC 23112 |||| || |||| |||| ||||||||||||| || | || ||||| || || |||| || Sbjct 1346167 ATCACGGAGATGGATATGATTTTGATGGTCCCGGCAACATCTTAGCGCACGCCTTTTATC 1346226 Query 23113 CTGGTACTGGAAGAGGAGGAGATGCTCATTTTGATTTAGAAGAAAACTGGACATT 23167 | ||| |||| ||||||| ||||| ||||||||| ||| ||| | ||| |||| Sbjct 1346227 CCGGTTCTGGTCGAGGAGGCGATGCACATTTTGATCAAGACGAAGATTGG-CATT 1346280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634988928433640