Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2 230 6e-55 seq64 196 1e-44 seq43 102 2e-16 seq7 87.8 4e-12 >seq2 Length=1318413 Score = 230 bits (254), Expect = 6e-55 Identities = 591/886 (67%), Gaps = 38/886 (4%) Strand=Plus/Plus Query 110271 ATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGT 110330 |||||| || || ||||||| || | |||||||||| |||||||| |||| | Sbjct 929769 ATTATCTATGAT---CGTGACTTTGGTTACAACTATTTTGGATTCAAAAC-CTTGGA--- 929821 Query 110331 GCTTATTTACTTCGTG----TCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCT 110386 || | ||||| || |||| || |||| | |||||||| ||||| ||||| | Sbjct 929822 GCGAAGCTACTTGTTGAGAATCAAAGGAAAGATTGTCGAACGTCCACAACATATGTTAAT 929881 Query 110387 TCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGT 110446 || ||||| |||| |||||||| | |||||| | || | |||||| ||| || | Sbjct 929882 GCGAGTTGCTGTTGGCATTCATGGCGAAGATATTGATGCAGCAATTGAAACTTACAATTT 929941 Query 110447 ATTAAGTAAAAAGAAAGCTATT-----CATGCTACTCCTACCCTATTTAACGCAGGAACT 110501 ||| || ||| | |||| ||||| |||| || || || || | ||| Sbjct 929942 ATT--GTCG---GAACGATATTTCACGCATGCCTCTCCAACACTCTTCGCAGCTGCAACA 929996 Query 110502 AATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGG-AATTAACGATGATTCTATTGAAGG 110560 | || ||||||| |||| || |||||| | | ||| ||| |||||||||||||| Sbjct 929997 CCTCGACCACAATTGTCTTCATG-TTTCTTATTGTCAATGTCCGAGGATTCTATTGAAGG 930055 Query 110561 TATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTAT 110620 ||||||| |||| | || | | | || |||| | ||||| ||||| | Sbjct 930056 CATTTATGGAACTCTCATGCAATGTTCATTGATCAGTAAATCAGCAGGAGGCATTGGATT 930115 Query 110621 TCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAAC 110680 | |||||| ||||| | |||||| | || || | || || ||||| Sbjct 930116 AAATGTTCATTGCATTCGAGCCAAAGGAAGCTACATTGCTGGCACAAATGGGATTTCAAA 930175 Query 110681 TGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG 110740 ||| || ||||| ||| | ||||| | ||| |||| || ||||| | |||||||| Sbjct 930176 TGGTCTCGTTCCCATGCTGAGAGTTTATAACAACACAGCTCGTTATGTCGACCAAGGTGG 930235 Query 110741 TAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGA 110797 || | | | || | || || || ||||| |||||||||||| || || ||||| Sbjct 930236 CAACAAACGTCCAGGAGCTTTCGCCATTTATCTTGAACCTTGGCATGGCGACATTTTTGA 930295 Query 110798 ATTCTTAGAACTTCGTA-AAAATCAA-GGATTTGAAGAACAAAGAGCACGTGATTTATTT 110855 ||| | || || | | |||| || ||| |||||| |||| ||||| | || Sbjct 930296 GTTCCTTGA--TTTGAAGAAAAACACTGGAAAAGAAGAAGCTCGAGCTCGTGACATGTTC 930353 Query 110856 TATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCT 110915 ||||| | ||||| | ||||| || ||| |||||| || ||||| ||||||||| Sbjct 930354 TATGCTCTTTGGATCCCCGATTTGTTTATGCGTCGTGTTGAAAGTAATGGAATGTGGTCT 930413 Query 110916 CTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGAC 110975 | |||||||||||| ||| | ||| ||| | || |||| || || | Sbjct 930414 TTGATGTGTCCTCATAACAGTCCAAATTTATTCGATACTTGGGGTGAAGATTTCGAGAAA 930473 Query 110976 CTTTACGAAAAATATGAAAAAGAAGGCAAGTT----TCGCAAACAAATTCCAGCTCAAGA 111031 ||||| |||||||| ||| ||||| | ||| ||| || | ||||||||| Sbjct 930474 CTTTATGAAAAATAAGAAGCTGAAGG-ACGTTACATTCGT---CAGGTGAAAGCTCAAGA 930529 Query 111032 ACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAA 111091 |||||||| ||| | || |||||||||||||||||||||||||| || | ||||| Sbjct 930530 TCTTTGGTTTGCGATCATCGAGTCACAAGTTGAAACTGGAACTCCTTACATGCTTTATAA 930589 Query 111092 AGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATT 111137 ||| | ||||||||||| |||||| ||| | || || ||| Sbjct 930590 AGACGCTTGCAATCGCAAATCGAATCAACAGAACGTTGGCACTATT 930635 Score = 147 bits (162), Expect = 5e-30 Identities = 304/446 (68%), Gaps = 15/446 (3%) Strand=Plus/Plus Query 110701 GAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCAT 110757 |||| | ||| |||| || ||||| | |||||||| || | | | || | | Sbjct 922079 GAGTTTATAACAACACAGCTCGTTATGTCGACCAAGGTGGCAACAAACGTCCAGGAGCTT 922138 Query 110758 TTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTA-AA 110816 | || || ||||| |||||||||||| || || ||||| ||| | || || | | || Sbjct 922139 TCGCCATTTATCTTGAACCTTGGCATGGCGACATTTTTGAGTTCCTTGA--TTTGAAGAA 922196 Query 110817 AATCAA-GGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875 || || ||| |||||| |||| ||||| | || ||||| | ||||| | || Sbjct 922197 AAACACTGGAAAAGAAGAAGCTCGAGCTCGTGACATGTTCTATGCTCTTTGGATCCCCGA 922256 Query 110876 TTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTC 110935 ||| || ||| |||||| || ||||| ||||||||| | |||||||||||| Sbjct 922257 TTTGTTTATGCGTCGTGTTGAAAGTAATGGAATGTGGTCTTTGATGTGTCCTCATAACAG 922316 Query 110936 TCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAA 110995 ||| | ||| ||| | || |||| || || | ||||| |||||||| ||| Sbjct 922317 TCCAAATTTATTCGATACTTGGGGTGAAGATTTCGAGAAACTTTATGAAAAATAAGAAGC 922376 Query 110996 AGAAGGCAAGTT----TCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTG 111051 ||||| | ||| ||| || | ||||||||| |||||||| ||| | | Sbjct 922377 TGAAGG-ACGTTACATTCGT---CAGGTGAAAGCTCAAGATCTTTGGTTTGCGATCATCG 922432 Query 111052 AATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAAT 111111 | |||||||||||||||||||||||||| || | |||||||| | |||||||||| Sbjct 922433 AGTCACAAGTTGAAACTGGAACTCCTTACATGCTTTATAAAGACGCTTGCAATCGCAAAT 922492 Query 111112 CTAATCAAATGAATTTAGGAACAATT 111137 | |||||| ||| | || || ||| Sbjct 922493 CGAATCAACAGAACGTTGGCACTATT 922518 Score = 96.9 bits (106), Expect = 8e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 112576 AAGTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAA 112635 ||||||||||| | | ||| || || |||||||| |||||| | ||||||| Sbjct 922661 AAGTGACAAAAACTGTCACAAAAAATCTCAATAAAATCATTGACGTTAATTACTATCCAG 922720 Query 112636 TTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGAT 112695 ||| |||| |||| || |||| ||| | || ||||| ||||| || ||||| | Sbjct 922721 TTCCTGAAGCCAAACGATCAAATATGCGTCATCGTCCCATTGGAATTGGAGTTCAAGGCT 922780 Query 112696 TAGCTGATGTATTTATGATGATGCGAATTCCTTTTGATTCT 112736 ||||||||| || || ||||||||||| |||||||| ||| Sbjct 922781 TAGCTGATGCTTTCATTATGATGCGAATGCCTTTTGAATCT 922821 Score = 96.9 bits (106), Expect = 8e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 112576 AAGTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAA 112635 ||||||||||| | | ||| || || |||||||| |||||| | ||||||| Sbjct 930778 AAGTGACAAAAACTGTCACAAAAAATCTCAATAAAATCATTGACGTTAATTACTATCCAG 930837 Query 112636 TTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGAT 112695 ||| |||| |||| || |||| ||| | || ||||| ||||| || ||||| | Sbjct 930838 TTCCGGAAGCCAAACGATCAAATATGCGTCATCGTCCCATTGGAATTGGAGTTCAAGGCT 930897 Query 112696 TAGCTGATGTATTTATGATGATGCGAATTCCTTTTGATTCT 112736 ||||||||| || || ||||||||||| |||||||| ||| Sbjct 930898 TAGCTGATGCTTTCATTATGATGCGAATGCCTTTTGAATCT 930938 >seq64 Length=2694604 Score = 196 bits (216), Expect = 1e-44 Identities = 553/842 (66%), Gaps = 13/842 (2%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||| || |||||||| | ||||| |||||| | | || || | || | Sbjct 2450166 TATTTCGGATTCAAAACATTGGAACGAAGTTATTTGTTGAAAATTAAAGGGAAAATTGTC 2450225 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 || | |||||||||||||| | || || || || || |||||||| || ||||| Sbjct 2450226 GAGAGACCTCAACACATGTTGATGCGAGTAGCTATCGGAATTCATGGTGCAGACATTAAT 2450285 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTACTCCTAC 110482 || | |||||| ||| || |||| | | || || | | | |||||| | || || Sbjct 2450286 GCAGCAATTGAAACTTACAATTTATT-ATCACAACGATACTTCACTCATGCATCGCCAAC 2450344 Query 110483 CCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAA 110542 || ||| || | ||| | || ||||| | ||||| ||||| || ||| Sbjct 2450345 ACTTTTTGCTGCTGCAACAAGAAGACCTCAATTATCGTCTTGTTTTCTACTCTCAATGTC 2450404 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 || |||||||| |||||| ||| | | || | || |||||| || ||| Sbjct 2450405 GGAGGATTCTATCGAAGGTGTTTTCCACACACTCACCCAATGTGCTCTCATCAGCAAATC 2450464 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 |||| |||||||| | |||||||| ||||| | | ||| | || ||| Sbjct 2450465 TGCTGGTGGAATTGGATTGAACGTTCATTGCATTCGAGCTAGGGGAAGTTACATTGCAGG 2450524 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || || | | | ||| ||||| || ||||| |||| |||||| |||| || Sbjct 2450525 CACAAATGGCATTGCTAATGGTCTTGTCCCTATGTTGCGAGTATTCAACAACACCGCTTG 2450584 Query 110723 ATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 ||||| | || ||||||| | | ||| | || || || ||||| ||||| || Sbjct 2450585 TTATGTTGACCAGAGTGGTAATAAACGTCCTGGAGCTTTCGCCATTTATCTTGAACCATG 2450644 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839 |||| || || || || || | | ||| |||||| ||| ||| || ||| Sbjct 2450645 GCATGGCGACATCTTCGAGTTTCTGAATCTTAAGAAAAATACGGGAGAGGAAAAAGTAAG 2450704 Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899 ||| | ||| | ||||||| | |||||| ||||||| || ||| |||||| | Sbjct 2450705 AGCCAGGGATATGTTTTATGGTCTTTGGATTCCAGATTTGTTTATGCGTCGTGTTGAGAG 2450764 Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGG 110959 ||||| ||||||||| | |||||||| | ||| || | | ||| || | || Sbjct 2450765 TAATGGAATGTGGTCTTTGATGTGTCCCTACAACAGTCCAGGATTGTTTGAAGTTTGGGG 2450824 Query 110960 AAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGC---AAGTTTCGCAAACA 111016 | |||| ||||| | |||||||| |||||||||| |||||| | |||| || Sbjct 2450825 AGAAGAATTTGATAAACTTTACGAGAAATATGAAAGTGAAGGCCGATATATTCG---TCA 2450881 Query 111017 AATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCC 111076 |||| ||| ||||| |||||||| || |||| || ||||| ||||| ||||| || Sbjct 2450882 AATTAAAGCACAAGATCTTTGGTTTGCCATTATTGAGTCTCAAGTGGAAACGGGAACGCC 2450941 Query 111077 TTATATTTTGTATAAAGAT-CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAA 111135 ||| || | || |||||| ||| ||||| ||||| || ||| |||| | ||||| | Sbjct 2450942 TTACATGCTTTACAAAGATGCAT-GCAATCGAAAATCAAACCAACAGAATCTTGGAACGA 2451000 Query 111136 TT 111137 || Sbjct 2451001 TT 2451002 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/183 (73%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||| ||| |||||| ||| | |||||| | ||||| || ||||||| ||| | Sbjct 895938 CATTTACGTGATGATGATTTGGTCATTTTCAATCGTCAACCGACATTGCATAAGATGAGT 895879 Query 305369 ATGATGGCTCATAAAGTCAAAGTA-TTATCTGGATTGACATTTCGATTAAATGTAAGTGC 305427 ||||||| ||| || ||||| || |||| | |||||||| | ||| | ||| Sbjct 895878 ATGATGGGACATCGTGTAAAAGTTCTTCCCTGG-TCAACATTTCGTATGAATCTCAGT-- 895822 Query 305428 TTGTAC---GCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 ||||| |||||| ||||| ||||||||||| || ||||||||| | ||||| || || Sbjct 895821 -TGTACATCGCCTTACAATGCTGATTTTGATGGTGACGAAATGAATCTTCATGTTCCACA 895763 Query 305485 ATC 305487 ||| Sbjct 895762 ATC 895760 >seq43 Length=2293527 Score = 102 bits (112), Expect = 2e-16 Identities = 318/486 (65%), Gaps = 10/486 (2%) Strand=Plus/Minus Query 131798 AAAAAGAAAGCAGAATGGGCTATTAAATGGATT--CAAGATGATTCCGCTAATTTTTCTA 131855 || ||||| || || ||||| ||||| ||||| || | || | || || ||| Sbjct 2197786 AAGAAGAAGGCTGACTGGGCAATTAACTGGATCAGCAGTAAGAAT--GCCAACTTTGGGG 2197729 Query 131856 CAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTA 131915 |||| || | || ||||| |||||||| || ||||| || ||| ||| | Sbjct 2197728 AAAGAATTATTGCATTTGCAGCAGTTGAAGGAATTTTCTTCAGTGGAAGTTTTGCTGCCA 2197669 Query 131916 TCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCT 131975 | |||||| ||||||| |||||||||||||| ||| | |||| |||||| |||| || | Sbjct 2197668 TATTTTGGATTAAGAAACGTGGATTGATGCCGGGATTGACATTTTCCAATGAATTGATTT 2197609 Query 131976 CGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATA 132035 | | || |||| |||||| ||| |||||| || || | | | ||| | | Sbjct 2197608 CACGTGACGAAGGCTTGCATTGTGATTTTGCTTGTTTGATGTTCCGTCATCTTGTCCAGA 2197549 Query 132036 AACTTGATGAAAATAA--TATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGA 132093 ||| | |||| || ||| || | || ||||| ||| | || || | || Sbjct 2197548 AAC--CACCAAAAGAACGAATTGTCGAAATCATTTCAGAAGCTGTTAAAATTGAACAAGA 2197491 Query 132094 GTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAA-TGCTGACTCTATGAAGG 132152 || | || || || |||||| || || | || ||||| ||| ||| ||| Sbjct 2197490 ATTCCTCACCGATGCCTTGCCTGTTAACATGTTGGGCATGAATTGCGAACT-GATGTCTC 2197432 Query 132153 AGTACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATA 132212 | |||||||| || |||||||||||| | | || | ||| || || || | Sbjct 2197431 AATACATTGAGTTTGTTGCTGATCGTCTTCTCGGTGAATTGGGAGTCGAAAAAATCTACA 2197372 Query 132213 ACACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCT 132272 |||| | || || | | | |||||| || |||||||| |||||||| ||||||| Sbjct 2197371 ACACAAAGAATCCTTTCAGCTTCATGGAGCTCATCTCGCTTGAGGGTAAAACAAACTTCT 2197312 Query 132273 TCGAAA 132278 |||||| Sbjct 2197311 TCGAAA 2197306 >seq7 Length=44536 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 ||||||||||| |||| | ||| ||| || ||||| ||||| ||||||||||| |||||| Sbjct 28210 ACATTTCGATTTAATGAATGTGTTTGCACACCTTACAATGCTGATTTTGATGGCGATGAA 28269 Query 305465 ATGAATATGCATGTACCTCAA 305485 |||||| | ||| |||| ||| Sbjct 28270 ATGAATTTACATTTACCGCAA 28290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186451458895243