Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq48 140 2e-28 >seq48 Length=1955607 Score = 140 bits (154), Expect = 2e-28 Identities = 176/238 (74%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| ||||||||||| || || |||||| || |||||||||||| Sbjct 847622 CACCACCACGAAGACGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGC 847563 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || || ||| | || || ||||| || || || || |||||||| ||||||||| ||| Sbjct 847562 TAAGAGTACGTCCATCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCG 847503 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | |||||||| || ||| || || || |||| || | || || || ||| Sbjct 847502 GAATGCCTTCTTTATCTTGAATCTT-TGCTTTGACATTCTCAATCGTATCCGATGGTTCA 847444 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTG 33757 || |||| ||||| |||||||| || || ||||| || ||||| ||||| ||||||| Sbjct 847443 ACCTCAAGGGTGATGGTTTTACCCGTCAATGTTTTGACGAAGATTTGCAT-GTTGGTG 847387 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| | ||| |||||||| |||||||| ||| | ||||| | || || Sbjct 646486 ACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 646427 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||| ||||| || ||||||||||| ||||| ||| | || | ||||| ||||| Sbjct 646426 AGTTGCTTTCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 646367 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || | | ||||| || | |||||| || ||| || |||| ||||| || || Sbjct 646366 ATCTT-GGCCTTAACATTTTCAATGGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTT 646308 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || ||||| || ||||| ||||| Sbjct 646307 GCCGGTCAATGTTTTGACGAAGATTTGCAT 646278 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||| | | | ||| ||||||||||| || || |||||| || |||||||||||| Sbjct 850892 CACCAACACGAAGACGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGC 850833 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || || ||| | || || ||||| || || || || |||||||| ||||||||| | | Sbjct 850832 TAAGAGTACGTCCATCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGGG 850773 Query 33641 GCACACCTTCTTT 33653 | | |||||||| Sbjct 850772 GAATGCCTTCTTT 850760 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||||| | ||| |||||||| |||||||| ||| Sbjct 621994 CCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCGCTC 622053 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || || | ||| ||||| || ||||||||||| ||||| ||| | || Sbjct 622054 AAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGA 622113 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || | | |||| || | ||||| || ||| || Sbjct 622114 ATTCCTTCCTTGTCTTGGATCTT-GGCCTTGACATTTTCAATCGTGTCAGATGGTTCGAC 622172 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || || ||||| || ||||| ||||| Sbjct 622173 TTCAAGGGTGATGGTCTTGCCGGTCAATGTTTTGACGAAGATTTGCAT 622220 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| |||||||| ||| | ||||| | || || | ||| || || || || Sbjct 647380 TCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTGCCAGCGAAG 647321 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||||||| ||||| ||| | || | ||||||||||| ||||| | || || | Sbjct 647320 ATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATTTT-GGCTTTGACGTT 647262 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | |||||| || ||| || |||| ||||| || || || || || ||||| || Sbjct 647261 TTCGATGGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGAC 647202 Query 33738 AAAGATCTGCAT 33749 ||||| ||||| Sbjct 647201 GAAGATTTGCAT 647190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328608803520960