Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq48 116 3e-21 seq37 86.0 6e-12 >seq48 Length=1955607 Score = 116 bits (128), Expect = 3e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 25165 ATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGT 25224 ||| | |||||||||| | || || |||||||| || || ||| | ||||| | || || Sbjct 847384 ATTCACCAACATGCAAATCTTCGTCAAAACATTGACGGGTAAAACCATCACCCTTGAGGT 847443 Query 25225 CGAAGCCAACG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATAC 25283 ||| ||| || |||| || ||| | || ||| ||| ||| |||||||| || || | Sbjct 847444 TGAA-CCATCGGATACGATTGAGAATGTCAAAGCAAAGATTCAAGATAAAGAAGGCATTC 847502 Query 25284 CGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCA 25343 |||| ||||||||| | | || | || || || ||| | || |||| | | | | | Sbjct 847503 CGCCAGATCAGCAACGTTTGATCTTCGCTGGTAAGCAATTAGAGGATGGACGTACTCTTA 847562 Query 25344 GCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||||| || || ||||| || || ||||||| ||||| Sbjct 847563 GCGATTACAACATCCAGAAAGAGTCAACACTTCATTTGGTGTT 847605 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || ||||| || || || || | ||||| | ||||||||| ||| Sbjct 646505 CATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCCTTGAAGTCGAA-CCAT 646563 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | || || ||||| | || || ||| || ||||| || || || || || || | Sbjct 646564 CTGACACCATCGAAAACGTCAAGGCAAAGATCCAAGATAAGGAAGGAATTCCCCCAGACC 646623 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 ||||| | | || | || || || ||||||||||||| | | | | | ||||| |||| Sbjct 646624 AGCAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACA 646683 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | |||||||||||||| || | ||||| || Sbjct 646684 ACATTCAAAAAGAATCAACTTTGCATTTGGT 646714 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || |||||||| ||||| || | ||||| | ||||||||| ||| Sbjct 622221 CATGCAAATCTTCGTCAAAACATTGACCGGCAAGACCATCACCCTTGAAGTCGAA-CCAT 622163 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | || || || || | || || || || || || || || || || || || | Sbjct 622162 CTGACACGATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACC 622103 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 ||||| | | |||| || || || ||||||||||||| | | | | | ||||| |||| Sbjct 622102 AGCAACGTTTGATTTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACA 622043 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | || ||||||||||| || | ||||| || Sbjct 622042 ACATCCAAAAAGAATCAACTTTGCATTTGGT 622012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || |||||||| ||||| || | ||||| | ||||||||| ||| Sbjct 646277 CATGCAAATCTTCGTCAAAACATTGACCGGCAAGACCATCACCCTTGAAGTCGAA-CCAT 646335 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | || || || || | || || || || || || || || || || || || | Sbjct 646336 CTGACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACC 646395 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 ||||| | | |||| || || || ||||||||||||| | | | | | ||||| |||| Sbjct 646396 AGCAACGTTTGATTTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACA 646455 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | || ||||||||||| || | ||||| || Sbjct 646456 ACATCCAAAAAGAATCAACTTTGCATTTGGT 646486 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || ||||| || || || || | ||||| | ||||||||| ||| Sbjct 647189 CATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCCTTGAAGTCGAA-CCAT 647247 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | || || ||||| | || ||| ||||| || ||||| || || || || || | Sbjct 647248 CTGACACCATCGAAAACGTCAAAGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGACC 647307 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 ||||| | | || | || ||||| ||||||||||||| | | | | | ||||| |||| Sbjct 647308 AGCAACGTTTGATCTTCGCTGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACA 647367 Query 25353 ATATTCAAAAAGA 25365 | || |||||||| Sbjct 647368 ACATCCAAAAAGA 647380 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| || ||||| || | ||||| | ||||||||| ||| | Sbjct 622448 ATGCAAATTTTCGTCAAAACTTTGACCGGCAAGACTATCACCCTTGAAGTCGAA-CCATC 622390 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || ||| || || || || || || || || || || Sbjct 622389 TGACACCATTGAAAACGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACCA 622330 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | | || | || || || ||||||||||||| | | | | | ||||| ||||| Sbjct 622329 GCAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACAA 622270 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||| ||||| || | ||||| || Sbjct 622269 CATCCAAAAGGAATCAACTTTGCATTTGGT 622240 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || ||||| || || || || | ||||| | || || ||| | Sbjct 646049 CATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCCTTGAGGTTGAACCATC 646108 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || || ||| | || || ||| || || || || || || || || || || Sbjct 646109 CGACACCATTGAGAATGTTAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCA 646168 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | | || | || ||||| ||||||||||||| | | | | | ||||| ||||| Sbjct 646169 GCAACGTTTGATCTTCGCTGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACAA 646228 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||| ||||| || | ||||| || Sbjct 646229 CATCCAAAAGGAATCAACTTTGCATTTGGT 646258 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || ||||| || || || || | ||||| | || || ||| | Sbjct 646961 CATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCCTTGAGGTTGAACCATC 647020 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || || ||| | || || ||| || || || || || || || || || || Sbjct 647021 CGACACCATTGAGAATGTTAAGGCAAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCA 647080 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | | || | || || || ||||||||||||| | | | | | ||||| ||||| Sbjct 647081 GCAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACAA 647140 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||||||||| || | ||||| || Sbjct 647141 CATCCAAAAAGAATCAACTTTGCATTTGGT 647170 >seq37 Length=1894237 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || ||||| || || || || | ||||| | ||||||||| ||| Sbjct 798483 CATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCCTTGAAGTCGAA-CCAT 798425 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | || || ||||| | || || ||| || ||||| || || || || || || | Sbjct 798424 CTGACACCATCGAAAACGTCAAGGCAAAGATCCAAGATAAGGAAGGAATTCCCCCAGACC 798365 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 ||||| | | | | || || || ||||||||||||| | | | | | ||||| |||| Sbjct 798364 AGCAACGTTTGAACTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACA 798305 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | || ||||| ||||| || | ||||| || Sbjct 798304 ACATCCAAAAGGAATCAACATTGCATTTGGT 798274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444962190272160