Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq48 122 8e-23 seq37 104 2e-17 seq889 100 3e-16 >seq48 Length=1955607 Score = 122 bits (134), Expect = 8e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 35502 CTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 ||| |||||||||||| | | | |||||||| || || |||||||| ||||||| Sbjct 621758 CTTAATTTCCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGGATGTTGT 621817 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 | ||| ||| || || | || || |||||||| || || || ||||| || ||||||| Sbjct 621818 AGTCGCTCAAAGTGCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGT 621877 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCG 35681 | | |||| | |||||||| ||||||| ||| | | || | | |||||| | Sbjct 621878 CTGGTGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTAACATTTTCAATCGTGTCTGATG 621937 Query 35682 ATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || || | ||||| || || || ||||||||||| || || || ||||| Sbjct 621938 GTTCAACTTCAAGAGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 621992 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| || || |||||||| |||||||| ||| | Sbjct 646276 CCACCACGGAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTC 646217 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || || ||||| || || || ||||| || |||||||| | |||| Sbjct 646216 AAAGTGCGACCATCTTCGAGTTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGAGGA 646157 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| ||||||| ||| | | | | | |||||| | ||| ||| Sbjct 646156 ATTCCTTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGATGGTTCAACC 646097 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || ||||||||||| || || || ||||| Sbjct 646096 TCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 646050 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| || || || |||||||||||||| ||| ||| || ||| | || || Sbjct 645802 ACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTGCGCCCATCTTCG 645743 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || ||||| || || || ||||| || |||||||| | |||| | |||||||| | Sbjct 645742 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGG 645683 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 |||||| ||| | | || | | ||||| | ||| || || | ||||| || || Sbjct 645682 ATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCAAGAGTGATAGTCTTG 645623 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCATTCT 35739 || ||||||||||| || || || ||||| || Sbjct 645622 CCAGTCAAAGTTTTAACGAAGATTTGCATGCT 645591 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| || || |||||||| |||||||| ||| ||| || || | || || Sbjct 646942 ACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 646883 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || ||||| || || || ||||| || |||||||| | |||| | |||||||| | Sbjct 646882 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 646823 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 |||||| ||| | | || | | |||||| | ||| || || | ||||| || || Sbjct 646822 ATCTTTGCCTTAACATTTTCAATCGTGTCTGATGGTTCAACTTCAAGAGTGATGGTCTTG 646763 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||||||||| || || || ||||| Sbjct 646762 CCAGTCAAAGTTTTGACGAAGATTTGCAT 646734 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| || || |||||||| |||||||| ||| | Sbjct 622222 CCACCACGGAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTC 622281 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || || ||||| || || || ||||| || |||||||| | ||| Sbjct 622282 AAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGTGGA 622341 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| ||||||| ||| | || | | ||||| | ||| || Sbjct 622342 ATTCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTTTCAATGGTGTCAGATGGTTCGACT 622401 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | ||||| || || || ||||||||||| || || || ||||||||| Sbjct 622402 TCAAGGGTGATAGTCTTGCCGGTCAAAGTTTTGACGAAAATTTGCATTCTG 622452 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| || || || ||||| |||||||| ||| | Sbjct 647188 CCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCGCTC 647129 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || || ||||| || || || ||||| || |||||||| | ||| Sbjct 647128 AAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGA 647069 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| ||||||| ||| | | | | | |||||| | ||| ||| Sbjct 647068 ATTCCTTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGATGGTTCAACC 647009 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || ||||||||||| || || || ||||| Sbjct 647008 TCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 646962 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||||||||| | || ||| || || |||||||||||| | Sbjct 847620 CCACCACGAAGACGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCG-CT 847562 Query 35570 AAG-GTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 ||| || || | || || | |||||||| || || ||||| || ||||| || | || Sbjct 847561 AAGAGTACGTCCATCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGG 847502 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 || || || || || |||||| || | | | | | ||| || | ||| || Sbjct 847501 AATGCCTTCTTTATCTTGAATCTTTGCTTTGACATTCTCAATCGTATCCGATGGTTCAAC 847442 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| |||||||||||||| ||||| || || || ||||| Sbjct 847441 CTCAAGGGTGATGGTTTTACCCGTCAATGTTTTGACGAAGATTTGCAT 847394 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| || || || |||||||||||||| ||| | Sbjct 646732 CCACCACGGAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTC 646673 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || || ||||| || || || ||||| || |||||||| | ||| Sbjct 646672 AAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGA 646613 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| || ||||||| ||| | || | | ||||| | ||| || Sbjct 646612 ATTCCTTCCTTATCTTGGATCTTTGCCTTGACGTTTTCGATGGTGTCAGATGGTTCGACT 646553 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || ||||||||||| || || || ||||| Sbjct 646552 TCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 646506 >seq37 Length=1894237 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| || || ||||||||||||||||| ||| | Sbjct 798712 CCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCGCTC 798771 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || || ||||| || || || ||||| || ||||| || | ||| Sbjct 798772 AAAGTGCGGCCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGA 798831 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| ||||||| ||| | | || | | ||||| | ||| || Sbjct 798832 ATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACT 798891 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCT 35739 || | ||||| || || || ||||||||||| || || || ||||| || Sbjct 798892 TCAAGAGTGATAGTCTTGCCAGTCAAAGTTTTAACGAAGATTTGCATGCT 798941 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 || |||||||||||| | | | |||||||| || || |||||||| |||||||| Sbjct 798249 TTAATTTCCACCACGGAGACGGAGAACCAAATGCAATGTTGATTCCTTTTGGATGTTGTA 798308 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 ||| ||| || || | || || || ||||| || || || |||| || |||||||| Sbjct 798309 GTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGTTCAAACGTTGCTGGTC 798368 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA 35682 | |||| | ||||| || ||||||| ||| | || | | ||||| | Sbjct 798369 TGGGGGAATTCCTTCCTTATCTTGGATCTTTGCCTTGACGTTTTCGATGGTGTCAGATGG 798428 Query 35683 TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || || | ||||| || || || ||||||||||| || || || ||||| Sbjct 798429 TTCGACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 798482 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| || || || ||||| |||||||| ||| ||| || || | || || Sbjct 798502 ACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 798561 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || ||||| || || || ||||| || |||||||| | |||| | |||||||| | Sbjct 798562 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGG 798621 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 |||||| ||| | | | | | ||||| | ||| ||||| | ||||| || || Sbjct 798622 ATCTTTGCCTTAACATTCTCAATGGTGTCAGATGGTTCAACCTCAAGAGTGATGGTCTTG 798681 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||||||||| || || || ||||| Sbjct 798682 CCAGTCAAAGTTTTGACGAAGATTTGCAT 798710 >seq889 Length=890 Score = 100 bits (110), Expect = 3e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 35502 CTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 ||| |||||||||||| | | | |||||||| || || |||||||||||||||| Sbjct 322 CTTAATTTCCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGAATGTTGT 263 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 | ||| ||| || || | || || || ||||| || || || ||||| || ||||||| Sbjct 262 AGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGT 203 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCG 35681 | | |||| | |||||||| |||||| || | || | | ||||| | Sbjct 202 CTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCCGATG 143 Query 35682 ATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || || | ||||| || || || |||||||| || || || || ||||| Sbjct 142 GTTCAACTTCAAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 88 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450659697396040