Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq63 199 3e-46 seq43 179 3e-40 seq54 132 4e-26 seq40 87.8 1e-12 >seq63 Length=2199633 Score = 199 bits (220), Expect = 3e-46 Identities = 378/551 (69%), Gaps = 4/551 (1%) Strand=Plus/Minus Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACT 40925 |||||| | || || |||||||| ||||||| ||| |||||||| || |||||| ||| Sbjct 1194282 GGTGATTTGGGACCAGTTTATGGCTTTCAGTGGCGTCATTTTGGTGCTGAATATGGCAC- 1194224 Query 40926 ATGTACTC-TGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGA- 40983 ||| | | |||||| || ||||||||| || ||| | || ||||| || |||| Sbjct 1194223 ATGCAATGATGATTACACTGGTAAAGGAATCGACCAACTGAAGGAAGTTATCGA-ACGAA 1194165 Query 40984 TTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTAC 41043 ||||| ||||| | ||| || || || || || ||||| |||| | | | Sbjct 1194164 TTAAAAGAAATCCCACTGACCGTCGCATTATCATGACAGCTTGGAATCCAATTCAGATTC 1194105 Query 41044 ATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAAC 41103 |||||||||||||||||||||| || || ||||| || ||||||| | Sbjct 1194104 CCGACATGGCATTGCCACCTTGTCATTGCTTGGTGCAATTTTATGTCGCTGATGGTGAGC 1194045 Query 41104 TGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAG 41163 | ||||||||||| ||| | |||| ||||||||| || || || || || ||||| | Sbjct 1194044 TTAGTTGTCAATTGTACCAACGTTCAGCTGACATGGGTCTTGGTGTTCCTTTCAACATTG 1193985 Query 41164 CGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAAT 41223 | ||||||| | ||||| || |||||||| || || || ||| | ||| ||| || | Sbjct 1193984 CTTCTTATGCTTTACTCACTTACATGATTGCTCATGTCACGAATCTTAAAATTGGCGATT 1193925 Query 41224 TTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAAC 41283 || |||| || | || |||| ||| ||||| | ||||| || ||||| || | || || Sbjct 1193924 TTATTCATACACTCGGCGATGCGCATGTTTACTTGAATCATATTGAGCCATTGAAAGCAC 1193865 Query 41284 AACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACA 41343 || | ||| || | |||||||| || |||||||| |||||||| | Sbjct 1193864 AAATTGAACGTGTGCCACGTCCATTTCCTCAATTAAAGATTAAACGTCAAGTTGAAAATA 1193805 Query 41344 TTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCC 41403 |||| || || | || ||||| | || | ||| |||| ||||| | ||| Sbjct 1193804 TTGACGACTTCAAATTTGAGGATTTCGAAATTATTGGCTACGATCCTTACCCAACCATCA 1193745 Query 41404 ACATGGACATG 41414 | ||||| ||| Sbjct 1193744 AAATGGAAATG 1193734 >seq43 Length=2293527 Score = 179 bits (198), Expect = 3e-40 Identities = 439/654 (67%), Gaps = 26/654 (4%) Strand=Plus/Minus Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 |||||||| || |||||||| |||||||| || || || ||| | ||||| |||||||| Sbjct 2197927 GAAGCACGCTGCTTTTATGGTTTTCAAATAGCTATGGAGAATGTACATTCTGAAATGTAT 2197868 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGA-AGCATCGATTGTTT---AA 44046 | || || || || ||||| | | | | | | ||| | ||| || || Sbjct 2197867 TCCTTGCTTATTGAAACTTACATTCGAAA----CTCCAAAGAGCGTGAATTTTTATTCAA 2197812 Query 44047 TGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAA 44105 || | |||||| | || || | | || | || || |||||||| |||| ||||| | Sbjct 2197811 CGCTGTCGAAACATTGCCATGTG-TGAAGAAGAAGGCTGACTGGGCAATTAACTGGATCA 2197753 Query 44106 --ATTCA-AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTT 44162 | | | |||| ||||| ||| || || | || ||||||| || ||||| |||| Sbjct 2197752 GCAGTAAGAATGCCAACTTTGGGGAAAGAATTATTGCATTTGCAGCAGTTGAAGGAATTT 2197693 Query 44163 TCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGT 44222 |||| ||| ||||| |||||||||||| | |||||||| || |||||||| || | Sbjct 2197692 TCTTCAGTGGAAGTTTTGCTGCCATATTTTGGATTAAGAAACGTGGATTGATGCCGGGAT 2197633 Query 44223 TGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCT 44282 |||| ||||| ||||| || || ||||| |||||||| ||||| ||||||||||| | Sbjct 2197632 TGACATTTTCCAATGAATTGATTTCACGTGACGAAGGCTTGCATTGTGATTTTGCTTGTT 2197573 Query 44283 TGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGA--CAATTACAGATATTGT 44340 || | | | |||| | | | || || || |||| |||| || || | Sbjct 2197572 TGATGTTCCGTCATCT---TGTCCAGAAACCACCA--AAAGAACGAATTGTCGAAATCAT 2197518 Query 44341 TGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAAT 44400 | ||| || || || || ||||||||||| | || || || ||||| || | | Sbjct 2197517 TTCAGAAGCTGTTAAAATTGAACAAGAATTCCTCACCGATGCCTTGCCTGTTAACATGTT 2197458 Query 44401 AGGAATGAAT---GAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACT 44457 || |||||| |||| ||||| ||||| ||||| | |||| |||||| | || Sbjct 2197457 GGGCATGAATTGCGAAC---TGATGTCTCAATACATTGAGTTTGTTGCTGATCGTCTTCT 2197401 Query 44458 TTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAA 44517 ||| |||| ||| ||| ||| | | | || || || || ||||| Sbjct 2197400 CGGTGAATTGGGAGTCGAAAAAATCTACAACACAAAGAATCCTTTCAGCTTCATGGAGCT 2197341 Query 44518 TATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 || ||| | || || ||||||||||| || ||||| |||||||| ||||| Sbjct 2197340 CATCTCGCTTGAGGGTAAAACAAACTTCTTCGAAAAGAAAGTTGGAGAGTATCA 2197287 >seq54 Length=4029443 Score = 132 bits (146), Expect = 4e-26 Identities = 185/258 (72%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || |||||||| ||||||||| | || | |||||||||| ||| |||| || | || Sbjct 557250 CCTAAAATTGTCAATGGTCCTCAGATTCTTGATAAATATGTTGGTGAATCTGAGGCCAAC 557309 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | || |||||||||||||| |||||||||||| | || || | || | || ||| Sbjct 557310 ATTCGTCGTTTGTTTGCTGATGCTGAAGAAGAAGAGAAGCGACTTGGACCTAACAGTGGA 557369 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA 19608 | |||||||| || | |||||| | || ||||| |||||| ||||| || | || | Sbjct 557370 CTTCACATTATTATCTTTGATGAAATCGATGCAATTTGTAAGAGCAGAGGATCAGTTGCA 557429 Query 19609 ---AA---TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 || || || ||||| ||||| ||||||||| | || ||||| | || || ||| Sbjct 557430 GGCAACTCCGGTGTTCATGATACTGTCGTCAATCAATTACTTGCAAAAATTGATGGAGTT 557489 Query 19663 AACCAACTGAATAATATT 19680 | || |||||||| || Sbjct 557490 GAACAGGTGAATAATGTT 557507 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 19230 GAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATT 19289 |||||| || |||||| || ||| |||||| || || |||||||||| |||| || Sbjct 557002 GAAAGA--TGGGAATTGGTGGTTTGGATAAAGAATTCAATGCAATCTTTCGTCGAGCTTT 557059 Query 19290 TGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGG 19349 || ||| | || || | |||| ||||| ||||| | |||||||||||||| || Sbjct 557060 TGCTTCGAGAGTCTTCCCACCAGAAATCATTGAACAACTTGGATGTAAACATGTCAAAGG 557119 Query 19350 ACTTTTGCTTTATGGGCCACCGGG 19373 | ||||| ||||| |||||||| Sbjct 557120 CATATTGCTGTATGGTCCACCGGG 557143 >seq40 Length=1500142 Score = 87.8 bits (96), Expect = 1e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 115031 AATGGTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTC 115090 ||| ||||||||||| |||| |||||| ||||| || || | |||||| | || || Sbjct 430903 AATTGTCATACGTGATGGAATAGCATGTGGATTGATGATAATGTCTGGTGTAAGACCTTC 430962 Query 115091 GGCTGTGAACGGCATGTCGTGCTGATCG-TACATCATTCCACAAGTTCCTTTTTGAGCGG 115149 ||| || |||||||| | ||| ||| || ||||||||||||||||| || | Sbjct 430963 ACATGTAAATGGCATGTCTTCCTG-TCGATATTGAATTCCACAAGTTCCTTTCTGTCCAT 431021 Query 115150 TAAACGATGCAAATTTATCACCAATCTCAGGT 115181 | ||| ||||| ||||||||||| | |||| Sbjct 431022 GACGCGAAGCAAACTTATCACCAATTTGAGGT 431053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397340892146815