Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq64 114 2e-20 seq67 87.8 2e-12 >seq64 Length=2694604 Score = 114 bits (126), Expect = 2e-20 Identities = 358/548 (65%), Gaps = 21/548 (4%) Strand=Plus/Minus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||| || || || || || |||| ||| |||| || || | | |||||||| | Sbjct 2451458 CCACATGTCGAATTGCAGAATTCCTTTCGACACTGGAGAACCTTGGTAAGTCTCATAAGT 2451399 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462 || | || | | ||| | || || || | || || ||| ||||| || || Sbjct 2451398 TCCAAGTTCTTCAGAAAGTTCACAACTTGCTTCTAATGCGCCGAAATAAATTGTCTCGAA 2451339 Query 118463 AATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAA 118521 ||| | ||| | || |||| | ||| | || ||||| | | || || |||| Sbjct 2451338 AATCTGTTTATTAAGTTTACTTG-CTTCGGCTGATTCAAAAGGCATTCTCATCATGATAA 2451280 Query 118522 ATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCC 118581 || |||| || | |||||| || || | |||||||| ||||| | ||| || || || Sbjct 2451279 ATGCATCGGCTAAACCTTGAACTCCAATTCCAATTGGTCGATGACGCATGTTGGATTTTT 2451220 Query 118582 GAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 118640 ||| ||| | |||||||| ||| |||||| | |||| |||||| | | ||| Sbjct 2451219 TAGCT-TCTGGTATTGGATAAAAGTTCACATCGATGATTTTATTCAGATTTCTTGCTACA 2451161 Query 118641 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAG---TCTC-TTCATTG-- 118694 | ||| | | ||| | | |||||| ||||| | ||| |||| |||||| Sbjct 2451160 ATCTTGGCAACTTCCTTCAACTTTTCAAAATCATA----CGAAATTTCTCCTTCATTTTT 2451105 Query 118695 -------ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 118747 ||| || | || || || || |||| |||||| |||| |||| || Sbjct 2451104 CGTCACAACAAACATGTTTAGAGCTATCGAAGCCAAATTACAAACAGCTACTTCATTTTT 2451045 Query 118748 ATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807 || | || || | ||| || ||||| | ||||||| | ||| || || | |||| Sbjct 2451044 ATTGGAATATTCAAGAATCTCTGTGCAAAGATTTGAACAATGAATCGTTCCAAGATTCTG 2450985 Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 118867 ||| ||||| ||| || || ||||| |||||||||||||| ||||| ||||| ||| Sbjct 2450984 TTGGTTTGATTTTCGATTGCATGCATCTTTGTAAAGCATGTAAGGCGTTCCCGTTTCCAC 2450925 Query 118868 TTGGGACT 118875 ||| |||| Sbjct 2450924 TTGAGACT 2450917 >seq67 Length=1615038 Score = 87.8 bits (96), Expect = 2e-12 Identities = 269/410 (66%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 11802 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAATGAGGAG 11861 |||||||||||| |||| ||| | | ||| ||||| ||| | ||||||| ||| | Sbjct 293099 TATCAAGCATCTACCTCAGAGCTTTATGGGAAAGTCGTTGAAACGCCACAAACTGAAAAA 293040 Query 11862 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCT-CAAAGGTTGCGGCACATTGGCTCGT 11920 || || ||||||||| |||| ||| || | | | ||| | | | |||| | || Sbjct 293039 ACTCCTTTCTATCCAAGATCTCCTTAT-GCATGTGCCAAGATGTATGGATTTTGGATTGT 292981 Query 11921 GAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGA 11980 || ||||| |||||| | || | | | ||||| ||| ||||||||| || || ||||| Sbjct 292980 GATAAATTATCGAGAAGCATACGATATGTTTGCTTGCAATGGTATTCTTTTTAATCACGA 292921 Query 11981 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGAT--CACCGATGGTATCAAACAA 12038 ||||| | | || ||||||| || | || || || | || | || | Sbjct 292920 ATCACCAAGGAGAGGAGAAAATTTCGTCACTAGAAAAATTACAAGAACTGTCGCCAAAAT 292861 Query 12039 ATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGG 12098 ||| | | ||| ||||| ||||| | || || || | | || | || ||| Sbjct 292860 ATC-TTTAAAACAACAGGAAGTTC-TTGAACTTGGAAATCTTGATTCAAAGCGCGATTGG 292803 Query 12099 GGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGAC 12158 || ||||||| |||||||| ||||| |||||| | | | ||| ||| || | || Sbjct 292802 GGGCATGCCAGAGACTATGTCGAAGCAATGTGGATGATGTTGCAATTGGAAAAGCCAGAA 292743 Query 12159 GAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 12208 || | ||| | || || || || || ||| ||| | || || ||||| Sbjct 292742 GATTTCGTCATTGCAACAGGAGAAACCCACAGTGTCCGAGAATTTGTTGA 292693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618251501554280