Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq67 86.0 7e-12 seq43 82.4 8e-11 >seq67 Length=1615038 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 124493 AAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTG 124552 ||| || |||| ||||| || || || || |||| ||||||||||| || | | Sbjct 292698 AAATTCTCGGACACTGTGGGTTTCTCCTGTTGCAATGACGAAATCTTCTGGCTTTTCCAA 292757 Query 124553 CTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCT-GCGTGCCCCCAGTCGCGCTTGG 124611 |||||||| | |||||| |||| ||| |||| |||| || |||||||| |||||||| | Sbjct 292758 TTGCAACATCATCCACATTGCTTCGACATAGT-CTCTGGCATGCCCCCAATCGCGCTTTG 292816 Query 124612 CATCCAGGTTTCCGAGCTC 124630 ||| || ||||| || || Sbjct 292817 AATCAAGATTTCCAAGTTC 292835 >seq43 Length=2293527 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 153832 AATTTTGAACTGAAAACGTTAGCCAACTTGGCACCGTAACCATTGCGACCGCCCGTCACG 153891 || ||||| ||||| | ||| ||| || |||||||||||||| ||||| || ||||| Sbjct 853821 AACTTTGAGCTGAAGATGTTGCACAATTTAGCACCGTAACCATTACGACCACCGGTCACT 853880 Query 153892 CGTTGTTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 153941 | ||| ||||||||||| || || |||||||| || |||||||| Sbjct 853881 TTCTCTTCTTCGTCGTTGTAATTCGATGATGTCAAAAGATGTCCAAAGAT 853930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547053456327400