Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq55 98.7 6e-16 seq48 96.9 2e-15 seq37 91.5 9e-14 seq889 89.7 3e-13 >seq55 Length=2529122 Score = 98.7 bits (108), Expect = 6e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||| | ||| || ||| ||||| ||||||||||| || | Sbjct 2062127 CCACCACGAAGACGGAGCACAAGATGAAGTGTGGATTCCTTCTGAATGTTATAGTCACTA 2062068 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||| || || ||||| || ||||| || || || || || Sbjct 2062067 AGAGTACGACCGTCTTCTAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 2062008 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || ||||||||| |||||| || | | |||||| ||| ||| ||| Sbjct 2062007 ATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATTGTATCTGATGGCTCGACT 2061948 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713 || | || || || || || || | |||||||| || || ||||| |||||| Sbjct 2061947 TCGAGAGTGATAGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTTGATT 2061894 >seq48 Length=1955607 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CT 34536 ||| || | |||||| | |||||||| | ||| || ||||||||||| || | || Sbjct 645821 GCCACCGCGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCT 645762 Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 |||||| ||| | ||||| ||||| || || || || || ||||| || ||||| || Sbjct 645761 CAAAGTG--CGCCCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGG 645704 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCC 34656 || | ||| ||||||||| ||||||| || | | ||| |||||| || Sbjct 645703 GGAATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCA 645644 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| | || || || || || || || ||||| || || || |||||| Sbjct 645643 ACTTCAAGAGTGATAGTCTTGCCAGTCAAAGTTTTAACGAAGATTTGCATG 645593 Score = 95.1 bits (104), Expect = 8e-15 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||||||||||||| || || ||| || || ||||| ||||| | Sbjct 847620 CCACCACGAAGACGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTA 847561 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | ||| ||||| || || || ||||| || || || ||||| Sbjct 847560 AGAGTACGTCCATCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGGA 847501 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCC 34656 | || || || ||| ||| |||| ||| || | ||| || || || | || Sbjct 847500 ATGCCTTCTTTATCT-TGAATCTTTGCTTTGACATTCTCAATCGTATC--CGATGGTTCA 847444 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || | ||| || |||||||| || || ||||| || || || ||||||||| Sbjct 847443 ACCTCAAGGGTGATGGTTTTACCCGTCAATGTTTTGACGAAGATTTGCATGTTG 847390 Score = 82.4 bits (90), Expect = 5e-11 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTGAAAGTGTTC 34546 ||||| | |||||||| | ||| || ||||||||||| || | || |||||| | Sbjct 646723 AGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTG--C 646666 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | | ||||| ||||| || || || || || ||||| || ||||| || || | ||| | Sbjct 646665 GACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATTCCTT 646606 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACG 34665 |||| ||| |||| |||| || ||| | || ||||| || ||||| | | Sbjct 646605 CCTTATCTTGGATC-TTTGCCTTGACGTTTTCGATGGTGTCAGATGGTTCGACTTCAAGG 646547 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || || ||||| || || || |||||| Sbjct 646546 GTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCATG 646505 >seq37 Length=1894237 Score = 91.5 bits (100), Expect = 9e-14 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CT 34536 ||| || | |||||| | |||||||| | ||| |||||||||||||| || | || Sbjct 798711 GCCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCGCT 798770 Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 |||||| || | ||||| ||||| || || || || || ||||| || || || || Sbjct 798771 CAAAGTG--CGGCCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGG 798828 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCC 34656 || | ||| ||||||||| ||||||| || | | ||| |||||| || Sbjct 798829 GGAATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCA 798888 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| | || || || || || || || ||||| || || || |||||| Sbjct 798889 ACTTCAAGAGTGATAGTCTTGCCAGTCAAAGTTTTAACGAAGATTTGCATG 798939 >seq889 Length=890 Score = 89.7 bits (98), Expect = 3e-13 Identities = 163/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTG 34537 || || | |||||| | |||||||| | ||| |||||||||||||| || | || Sbjct 314 CCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCGCTC 255 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||||| || | ||||| ||||| || || || || || ||||| || ||||| || | Sbjct 254 AAAGTG--CGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGG 197 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCT--CT 34654 | | ||| ||||||||| |||| || | ||| ||| | ||| ||||| || | | Sbjct 196 GAATTCCTTCCTTGTCTTGGATC-TTGGCTTTGACGTTTTCAATGGTGTC--CGATGGTT 140 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| | || || || || || || || || || || || || ||||| Sbjct 139 CAACTTCAAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 88 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314638450668779