Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq63 140 3e-28 >seq63 Length=2199633 Score = 140 bits (154), Expect = 3e-28 Identities = 440/672 (65%), Gaps = 26/672 (4%) Strand=Plus/Plus Query 118464 TTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTC 118523 ||||| ||||||||| ||||||| || ||||| ||||| || | |||||| || || || Sbjct 1193869 TTTCAATGGCTCAATATGATTCAAGTAAACATGCGCATCGCCGAGTGTATGAATAAAATC 1193928 Query 118524 ACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTAC 118583 ||| | |||| || | |||||||||||||| || | ||| || || | Sbjct 1193929 GCCAATTTTAAGATTCGTGACATGAGCAATCATGTAAGTGAGTAAAGCATAAGAAGCAAT 1193988 Query 118584 ATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTC 118643 || ||||||||||| ||||||||||| ||||| | ||||||||||| ||| ||||| Sbjct 1193989 GTTGAAAGGAACACCAAGACCCATGTCAGCTGAACGTTGGTACAATTGACAACTAAGCTC 1194048 Query 118644 CCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT----GGAA- 118698 || | || |||||||| || | | ||||| || |||| |||| |||| Sbjct 1194049 ACCATCAGCGACATAAAATTGCACCAAGCAATGACAAGGTGGCAATGCCATGTCGGGAAT 1194108 Query 118699 CTCAGTTGGGCAGGATTCCAGGCTGTTAAAACATGCCTTCTGCTATATGGTTCTACCTGT 118758 || | || |||||||| ||||| | | | | | | | || | | | Sbjct 1194109 CTGAATT-----GGATTCCAAGCTGTCATGATAATGCGACGGTCAGTGGGATTTCTTTTA 1194163 Query 118759 ATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGAGACTCGCAT 118818 || | || || | | || | || || | || || ||||| || | | | |||| Sbjct 1194164 ATTCGTTCGATAACTTCCTTCAGTTGGTCGATTCCTTTACCAGTGTAATCATCATTGCAT 1194223 Query 118819 CCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCTCCC 118878 |||||| || |||||| | ||| ||||| |||||||| || |||| ||| || Sbjct 1194224 GTGCCATATTCAGCACCAAAATGACGCCACTGAAAGCCATAAACTGGTCCCAAATCACC- 1194282 Query 118879 TGGGACCT-AAAATCT--AAACCTACTTTTCTC-TGAAATTCTTTTGACCCATTAGCATT 118934 |||| | || | ||| | | || |||||||| ||| | || ||| Sbjct 1194283 ---AACCTGACGATGTGGAAATCCAGAAGCGTCGAGAAATTCTCTTGTGCTGTTTCCATC 1194339 Query 118935 CCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAAA--AAC 118992 ||| || || ||| | | ||| |||| || || || | ||| || ||| Sbjct 1194340 CCAGATTCGAATGTTTTTCTCTTGCAGTAATTTAGCGTCGGTGGATC--CTTGAATGAAC 1194397 Query 118993 CAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAAC 119052 || |||||||||||| | || |||||||||| ||| || ||||| |||| ||||| Sbjct 1194398 CAGAGAAGCTCCTCAGCTACAGCTCTCCAAAATACTCGCTTAGTTGTCAACAAAGGAAAT 1194457 Query 119053 TGACCTCTAAG--TGAATATCTTGTTTGTGTTCCAAAAATAGACAGAGTCCCAACACCTG 119110 ||| | | ||| ||| | | ||||||||||||||||| | ||| |||||||| | Sbjct 1194458 TGATCACGAAGATTGA--AACGCATTTGTGTTCCAAAAATACTCTTAGTGCCAACACCAG 1194515 Query 119111 TTCTATCATCTC 119122 | | ||||||| Sbjct 1194516 TGCGGTCATCTC 1194527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414356762726332