Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq48 100 2e-16 seq37 95.1 9e-15 seq18525 87.8 1e-12 seq18365 82.4 5e-11 seq889 82.4 5e-11 >seq48 Length=1955607 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || |||||||| || ||||| || ||||| ||| | || Sbjct 646371 GACAAGGAAGGAATTCCACCAGACCAGCAACGTTTGATTTTCGCTGGAAAGCAACTCGAA 646430 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||| ||| ||||||||||||||||| ||||||||||||||| | Sbjct 646431 GATGGTCGCACTTTGAGCGACTACAACATCCAAAAAGAATCAACTTTGCATTTGGTTCTC 646490 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||||||| Sbjct 646491 CGTCTTCGTGGCGGC 646505 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || |||||| | || || || ||| || |||| |||||| | Sbjct 622449 AATGCAAATTTTCGTCAAAACTTTGACCGGCAAGACTATCACCCTTGAAGTCGAACCATC 622390 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | || ||||| ||| || ||||| ||||| |||| || || Sbjct 622389 TGACACCATTGAAAACGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACCA 622330 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 |||||| || || || || ||||| ||| | || || | |||| ||| ||| ||||| Sbjct 622329 GCAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACAA 622270 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||| || ||||||||||||||| | ||| | ||||| ||| Sbjct 622269 CATCCAAAAGGAATCAACTTTGCATTTGGTTCTCCGTCTCCGTGGTGGC 622221 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||| || || |||||| | ||||| || || || |||| || ||| | || Sbjct 646734 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACTCTTGAAGTTGAACCATCA 646793 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||||| | ||| || || ||| || ||||| ||||| |||| || | Sbjct 646794 GACACGATTGAAAAT--GTTAAGGCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACC 646851 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || || || ||||| ||| | || || | |||| ||| ||| |||| Sbjct 646852 AGCAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACA 646911 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| || ||||||||||||||| | ||| | ||||||||| Sbjct 646912 ACATCCAAAAGGAATCAACTTTGCATTTGGTTCTCCGTCTTCGTGGCGGC 646961 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || |||||||| || ||||| || ||||| ||| | || Sbjct 622127 GACAAGGAAGGAATTCCACCAGACCAGCAACGTTTGATTTTCGCTGGAAAGCAACTCGAA 622068 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||| ||| ||||||||||||||||| ||||||||||||||| | Sbjct 622067 GATGGTCGCACTTTGAGCGACTACAACATCCAAAAAGAATCAACTTTGCATTTGGTTCTC 622008 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||| ||| Sbjct 622007 CGTCTTCGTGGTGGC 621993 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||| || || |||||| | ||||| || ||| || |||| || ||| | || Sbjct 645594 ATGCAAATCTTCGTTAAAACTTTGACTGGCAAGACTATCACTCTTGAAGTTGAACCATCA 645653 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| ||||| ||| || ||||| ||||| |||| || | Sbjct 645654 GACACCATTGAAAAT--GTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCCCCAGACC 645711 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || || || ||||| ||| | || || | |||| ||| ||| |||| Sbjct 645712 AGCAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGGCGCACTTTGAGCGACTACA 645771 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| |||||||| ||||||||||||||| | ||| | || || ||| Sbjct 645772 ACATTCAAAAAGAATCAACTTTGCATTTGGTTCTCCGTCTTCGCGGTGGC 645821 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || |||||| | ||||| || || || |||| || ||| || Sbjct 646962 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCCTTGAGGTTGAACCATCC 647021 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||| || ||||| ||||| |||| || | Sbjct 647022 GACACCATTGAGAAT--GTTAAGGCAAAGATCCAAGACAAGGAAGGAATTCCCCCAGACC 647079 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || || || ||||| ||| | || || | |||| ||| ||| |||| Sbjct 647080 AGCAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACA 647139 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||||| ||||||||||||||| | ||| | ||||| ||| Sbjct 647140 ACATCCAAAAAGAATCAACTTTGCATTTGGTTCTCCGTCTTCGTGGTGGC 647189 Score = 95.1 bits (104), Expect = 9e-15 Identities = 165/235 (70%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||| || || ||||| | || || ||| || || |||| || ||| | Sbjct 847391 AACATGCAAATCTTCGTCAAAACATTGACGGGTAAAACCATCACCCTTGAGGTTGAAC-C 847449 Query 27847 ACCG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 | || ||||| | ||| |||||| ||| || || |||||||| ||||| Sbjct 847450 ATCGGATACGATTGAGAAT--GTCAAAGCAAAGATTCAAGATAAAGAAGGCATTCCGCCA 847507 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| || || || || || || ||||| || || | ||| | | |||| Sbjct 847508 GATCAGCAACGTTTGATCTTCGCTGGTAAGCAATTAGAGGATGGACGTACTCTTAGCGAT 847567 Query 27964 TACAACATCCAAAAAGAG--AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| |||||| | ||||| |||||||| |||||| | ||||| || Sbjct 847568 TACAACATCCAGAAAGAGTCAACACTT--CATTTGGTGTTGCGTCTTCGTGGTGG 847620 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 |||||| ||||| ||||| ||||| |||| || |||||||| || || || Sbjct 645897 GTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCTCCAGATCAGCAACGTTTGATCTTC 645956 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || ||||| ||| | || || | |||| ||| ||| |||||||||||||| || Sbjct 645957 GCTGGAAAGCAACTCGAAGATGGCCGCACTTTGAGCGACTACAACATCCAAAAGGAATCA 646016 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||||||| | ||| | ||||||||| Sbjct 646017 ACTTTGCATTTGGTTCTCCGTCTTCGTGGCGGC 646049 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||| || || |||||| | ||||| || || || |||| || ||| | || Sbjct 621992 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACTCTTGAAGTTGAACCATCA 621933 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||||| | ||| || || ||| || ||||| ||||| |||| || | Sbjct 621932 GACACGATTGAAAAT--GTTAAGGCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACC 621875 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || || || ||||| || | || || | |||| ||| ||| |||| Sbjct 621874 AGCAACGTTTGATCTTCGCTGGAAAGCAGCTCGAAGATGGTCGCACTTTGAGCGACTACA 621815 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || ||||||||||||||| | ||| | ||||| || Sbjct 621814 ACATCCAAAAGGAATCAACTTTGCATTTGGTTCTCCGTCTTCGTGGTGG 621766 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || |||||| | ||||| || || || |||| |||||| | Sbjct 646506 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCCTTGAAGTCGAACCATCT 646565 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || ||||| ||| || || || ||||| |||| || ||| Sbjct 646566 GACACCATCGAAAACGTCAAGGCAAAGATCCAAGATAAGGAAGGAATTCCCCCAGACCAG 646625 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || || || ||||| ||| | || || | |||| ||| ||| |||||| Sbjct 646626 CAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACAAC 646685 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || |||||||| ||||||||||||||| | ||| | ||||| ||| Sbjct 646686 ATTCAAAAAGAATCAACTTTGCATTTGGTTCTCCGTCTCCGTGGTGGC 646733 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || |||||| | ||||| || || || |||| || ||| || Sbjct 646050 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCCTTGAGGTTGAACCATCC 646109 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||| || ||||| ||||| |||| || | Sbjct 646110 GACACCATTGAGAAT--GTTAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGACC 646167 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || || || || || ||| | || || | |||| ||| ||| |||| Sbjct 646168 AGCAACGTTTGATCTTCGCTGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACA 646227 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| || ||||||||||||||| | ||| | ||||| ||| Sbjct 646228 ACATCCAAAAGGAATCAACTTTGCATTTGGTTCTCCGTCTCCGTGGTGGC 646277 >seq37 Length=1894237 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || |||||||| || || || || ||||| ||| | || Sbjct 798617 GACAAGGAAGGAATTCCCCCAGACCAGCAACGTTTGATCTTCGCTGGAAAGCAACTCGAA 798558 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||| ||| ||||||||||||||||| ||||||||||||||| | Sbjct 798557 GATGGTCGCACTTTGAGCGACTACAACATCCAAAAAGAATCAACTTTGCATTTGGTTCTC 798498 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||||||| Sbjct 798497 CGTCTTCGTGGCGGC 798483 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||| || || |||||| | ||||| || ||| || |||| || ||| | || Sbjct 798938 ATGCAAATCTTCGTTAAAACTTTGACTGGCAAGACTATCACTCTTGAAGTTGAACCATCA 798879 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| ||||| ||| || ||||| ||||| |||| || | Sbjct 798878 GACACCATTGAAAAT--GTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCCCCAGATC 798821 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || || || ||||| ||| | || || | |||| ||| ||| |||| Sbjct 798820 AGCAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGCCGCACTTTGAGCGACTACA 798761 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| ||||| || ||||||||||||||| | ||| | ||||| ||| Sbjct 798760 ACATTCAAAAGGAATCAACTTTGCATTTGGTTCTCCGTCTTCGTGGTGGC 798711 >seq18525 Length=125 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || |||||||| || ||||| || ||||| ||| | || Sbjct 1 GACAAGGAAGGAATTCCACCAGACCAGCAACGTTTGATTTTCGCTGGAAACCAACTCGAA 60 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||| ||| ||||||||||||||||| ||||||||||||||| | Sbjct 61 GATGGTCGCACTTTGAGCGACTACAACATCCAAAAAGAATCAACTTTGCATTTGGTTCTC 120 Query 28003 CGT 28005 ||| Sbjct 121 CGT 123 >seq18365 Length=126 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || |||||||| || ||||| || |||| ||| | || Sbjct 2 GACAAGGAAGGAATTCCACCAGACCAGCAACGTTTGATTTTCGCTGGAAGGCAACTCGAA 61 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||| ||| ||||||||||||||||| ||||||||||||||| | Sbjct 62 GATGGTCGCACTTTGAGCGACTACAACATCCAAAAAGAATCAACTTTGCATTTGGTTCTC 121 Query 28003 CGT 28005 ||| Sbjct 122 CGT 124 >seq889 Length=890 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || ||| | ||||| || ||| || |||| || ||| || | Sbjct 88 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAGACTATCACTCTTGAAGTTGAAC-CATC 146 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | || |||||| || || ||||| ||||| |||| || Sbjct 147 GGACACCATTGAAAAC--GTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGAC 204 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| || || || || ||||| ||| | || || | |||| ||| ||| ||| Sbjct 205 CAGCAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTAC 264 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| || ||||||||||||||| | ||| | ||||| || Sbjct 265 AACATTCAAAAGGAATCAACTTTGCATTTGGTTCTCCGTCTTCGTGGTGG 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355759338134301