Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq48 82.4 7e-11 >seq48 Length=1955607 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| || || |||||| || || || |||||| ||| || ||| | Sbjct 847608 CGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTAAGAGTACGTCCA 847549 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | || || || || || || | ||| ||||| || | || | || ||||| Sbjct 847548 TCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGGAATGCCTTCTTTA 847489 Query 39190 TCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 || ||| | | || ||||| || | | |||||| | || || || | ||||| Sbjct 847488 TCT-TGAATCTTTGCTTTGACATTCTCAATCGTATCCGATGGTTCAACCTCAAGGGTGAT 847430 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||| ||||||| ||||| || ||||||||||| || Sbjct 847429 GGTTTTACCCGTCAATGTTTTGACGAAGATTTGCATGTT 847391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429421198627619