Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq48 131 1e-25 seq37 127 1e-24 seq55 113 3e-20 >seq48 Length=1955607 Score = 131 bits (144), Expect = 1e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || ||||| ||||| | ||||| ||||| ||||| || || ||||| | Sbjct 847391 AACATGCAAATCTTCGTCAAAACATTGACGGGTAAAACCATCACCCTTGAGGTTGAACCA 847450 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || |||| ||| | ||| |||| | || || |||||||| | |||||||| Sbjct 847451 TCGGATACGATTGAGAATGTCAAAGCAAAGA-TTCAAGATAAAGAAGGCATTCCGCCAGA 847509 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || ||||| || || || || || ||| | || || | ||| ||| | ||||||| Sbjct 847510 TCAGCAACGTTTGATCTTCGCTGGTAAGCAATTAGAGGATGGACGTACTCTTAGCGATTA 847569 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 |||||| || |||||||| ||| | ||||| || || Sbjct 847570 CAACATCCAGAAAGAGTCAACACTTCATTTGGTGTT 847605 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||||||||| | || || || || |||||||| |||||||| | | Sbjct 645594 ATGCAAATCTTCGTTAAAACTTTGACTGGCAAGACTATCACTCTTGAAGTTGAACCATCA 645653 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||| || ||||| ||||| | || ||||| || Sbjct 645654 GACACCATTGAAAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCAG 645713 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || || || || ||||| ||||| | |||||||| |||| |||||| Sbjct 645714 CAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGGCGCACTTTGAGCGACTACAAC 645773 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || |||||||| || || || ||||| ||| Sbjct 645774 ATTCAAAAAGAATCAACTTTGCATTTGGTT 645803 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| | || || || || ||||| || ||||| || | | Sbjct 647190 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCCTTGAAGTCGAACCATCT 647249 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| ||||| ||||||||||| | || ||||| || Sbjct 647250 GACACCATCGAAAACGTCAAAGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGACCAG 647309 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || || ||||| ||||| ||||| | |||||||| |||| |||||| Sbjct 647310 CAACGTTTGATCTTCGCTGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACAAC 647369 Query 23791 ATACAAAAAGA 23801 || |||||||| Sbjct 647370 ATCCAAAAAGA 647380 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 23707 AAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGAC 23766 |||||||| | || |||||||| || ||||| || || || || || ||| | || || Sbjct 850760 AAAGAAGGCATTCCCCCAGATCAGCAACGTTTGATCTTCGCTGGTAAGCAATTAGAGGAT 850819 Query 23767 GAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 | ||| ||| | ||||||||||||| || |||||||| ||| | ||||| || || Sbjct 850820 GGACGTACTCTTAGCGATTACAACATCCAGAAAGAGTCAACACTTCATTTGGTGTT 850875 >seq37 Length=1894237 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||||||||| | || || || || |||||||| |||||||| | | Sbjct 798938 ATGCAAATCTTCGTTAAAACTTTGACTGGCAAGACTATCACTCTTGAAGTTGAACCATCA 798879 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||| || ||||| ||||| | || |||||||| Sbjct 798878 GACACCATTGAAAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAG 798819 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || || || || ||||| ||||| | |||||||| |||| |||||| Sbjct 798818 CAACGTTTGATCTTCGCTGGAAAGCAACTCGAAGATGGCCGCACTTTGAGCGACTACAAC 798759 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| || || || || ||||| ||| Sbjct 798758 ATTCAAAAGGAATCAACTTTGCATTTGGTT 798729 >seq55 Length=2529122 Score = 113 bits (124), Expect = 3e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| ||||| ||||| || || || |||||||||||||| || | Sbjct 2061898 AAAATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACTATCACTCTCGAAGTCGAGCCA 2061957 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||||| | || || || ||||| |||||| | || |||||| Sbjct 2061958 TCAGATACAATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATTCCTCCAGAT 2062017 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || ||||| || ||||| || || ||| | ||||||| || ||| | | || || Sbjct 2062018 CAGCAACGTTTGATCTTTGCTGGAAAGCAATTAGAAGACGGTCGTACTCTTAGTGACTAT 2062077 Query 23788 AACATACAAAAAGAGTCCACATTACAT 23814 ||||| || || || |||||| | ||| Sbjct 2062078 AACATTCAGAAGGAATCCACACTTCAT 2062104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337911708511604