Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq43 228 7e-55 seq51 91.5 1e-13 >seq43 Length=2293527 Score = 228 bits (252), Expect = 7e-55 Identities = 460/674 (68%), Gaps = 24/674 (4%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 || ||| |||||| || || ||| |||||||||||| || ||||| || || | | Sbjct 2197275 ACTCCAGCTTTTTGATACTCTCCAACTTTCTTTTCGAAGAAGTTTGTTTTACCCTCAAGC 2197334 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTTTT----TCACACT 4362 || || ||||| || || ||||| ||| |||||| || |||| || || | Sbjct 2197335 GAGATGAGCTCCATGAAGCTGAAAGGATTCTTTGTGTTGTAGATTTTTTCGACTCCCAAT 2197394 Query 4363 TTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGT 4422 | | | || | || ||||| ||||| || || || || ||| |||||||| | Sbjct 2197395 TCACCG-----AGAAGACGATCAGCAACAAACTCAATGTATTGAGACATCAGTTCGCAAT 2197449 Query 4423 TAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGG 4482 | || || | | | ||||| | || | || | || |||||||| || | || | Sbjct 2197450 TCATGCCCAACATGTTAACAGGCAAGGCATCGGTGAGGAATTCTTGTTCAATTTTAACAG 2197509 Query 4483 CTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACA 4542 |||||| || || || ||| ||||| | |||||| | || | | | |||| Sbjct 2197510 CTTCTGAAATGATTTCGACAATTCGTTCTTTTGGTGGTTTCTGGACAAGATGACGGAACA 2197569 Query 4543 ATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACG 4602 ||||| ||||||||||||||||| |||||||| | ||||| ||| || ||||| | Sbjct 2197570 TCAAACAAGCAAAATCACAATGCAAGCCTTCGTCACGTGAAATCAATTCATTGGAAAATG 2197629 Query 4603 TTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAA 4662 | ||||| ||||| || || | || |||| ||||||||| || ||||| ||| | Sbjct 2197630 TCAATCCCGGCATCAATCCACGTTTCTTAATCCAAAATATGGCAGCAAAACTTCCACTGA 2197689 Query 4663 AGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGT 4722 |||| || ||||| || || ||||| || | |||| ||| || || |||| || | Sbjct 2197690 AGAAAATTCCTTCAACTGCTGCAAATGC-AATAATTCTTTCCCCAA--AGTTGGCATTCT 2197746 Query 4723 --CT-TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATA 4779 || | ||||| || | |||||||| ||| || ||||| || || || | ||| | | Sbjct 2197747 TACTGCTGATCCAGTTAATTGCCCAGTCAGCCTTCTTCTTCACACATGGCAATGTTTCGA 2197806 Query 4780 TAGCGTTAAAT---AATTTACTTTTTTCAAATGG-GTCTTGAATATAAGTGTCTATTAGT 4835 |||||| ||| |||| || | || ||| || | |||| ||||| || || || Sbjct 2197807 CAGCGTTGAATAAAAATTCACGCTCTT----TGGAGTTTCGAATGTAAGTTTCAATAAGC 2197862 Query 4836 AGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTA 4895 | | ||||||||||||||||| ||| || ||||| || ||||| || |||||||| | Sbjct 2197863 AAGGAATACATTTCAGAATGTACATTCTCCATAGCTATTTGAAAACCATAAAAGCAGCGT 2197922 Query 4896 GCTTCTGTTACTTG 4909 ||||| || || || Sbjct 2197923 GCTTCAGTAACCTG 2197936 Score = 123 bits (136), Expect = 2e-23 Identities = 134/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 |||| |||||||| | | ||||||||| ||||| ||||| || || || |||||| | Sbjct 2197989 TTACCTGAACTTCCTGGCTAAATCTTTCAACTAAATTTTCATTCACGATGCCGTCAGATG 2198048 Query 4963 CTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCC 5022 ||||||| || ||||| ||||| || ||||||| ||||| | ||||| |||| Sbjct 2198049 CTGCAAAGAATGCCAATACATGTGAGATAAAGTGACGTTCGGTATCTTTAAGGCCATTCC 2198108 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 | || | ||| || | | ||||||||||||||| |||||||| ||||||||||| Sbjct 2198109 AATGATCAAGATCCTTTGACAGATCAACTTCTTCAACCGTCCAAAATGACGCTTCCGC 2198166 >seq51 Length=676905 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 ||||||||||| ||||||||| | ||| ||| || || || || | ||||| || Sbjct 449899 GTTAAAACCGACATTCAAATTGAACTTCCTGAAGGATGTTATGGTCGTGTTGCTCCACGA 449840 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||||| || |||| || ||||||| || || ||||| || || || || ||| ||| Sbjct 449839 TCTGGCTTAGCAGCAAAGAACTTTATTGATGTTGGTGCTGGCGTCATTGACGAAGATTAT 449780 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAAT 31921 |||| |||||||| |||| |||||||| Sbjct 449779 CGAGGCAACGTTGGCGTTGTAATGTTTAAT 449750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426925921498079