Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq48 111 1e-19 seq55 100 2e-16 seq37 98.7 7e-16 seq889 91.5 1e-13 >seq48 Length=1955607 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||||||||||||||| ||| | ||| | || || || ||||| || || ||| Sbjct 646240 TCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTGCCAGCGAAG 646181 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| ||||| |||| ||| | |||||||| || ||||| ||| | || || Sbjct 646180 ATCAAACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATCTT-TGCCTTAACATT 646122 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | |||||||||| | ||| ||||| | || || ||||| || || | || || || Sbjct 646121 CTCAATGGTGTCGGATGGTTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGAC 646062 Query 44326 GAAGATTTGCATG 44338 ||||||||||||| Sbjct 646061 GAAGATTTGCATG 646049 Score = 102 bits (112), Expect = 6e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||||||||||||||| ||| | ||| | || || || ||||| || || ||| Sbjct 646012 TCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCTTCGAGTTGCTTTCCAGCGAAG 645953 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-T 44265 |||||||| |||||||||| ||| | |||||||| || || || |||| | | | Sbjct 645952 ATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGAT-TTTGGCTTTGACGTT 645894 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | |||||||| | | ||| || || | || || ||||| || || | ||||| || Sbjct 645893 TTCGATGGTGTCAGATGGTTCAACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGAC 645834 Query 44326 GAAGATTTGCATG 44338 ||||||||||||| Sbjct 645833 GAAGATTTGCATG 645821 Score = 102 bits (112), Expect = 6e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || |||||||||||||| ||| | ||| | || || || ||||| || || ||| Sbjct 647152 TCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAG 647093 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| ||||| |||| || | |||||||| || ||||| ||| | || || Sbjct 647092 ATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTT-TGCCTTAACATT 647034 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | |||||||||| | ||| ||||| | || || ||||| || || | || || || Sbjct 647033 CTCAATGGTGTCGGATGGTTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGAC 646974 Query 44326 GAAGATTTGCATG 44338 ||||||||||||| Sbjct 646973 GAAGATTTGCATG 646961 Score = 100 bits (110), Expect = 2e-16 Identities = 159/224 (71%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 |||||||| ||||| || ||| || ||||||||||||||| || || | || Sbjct 847606 CAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTAAGAGTACGTCCATC 847547 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || | ||||| || || ||||||||||| |||||||||| || | ||||| || || Sbjct 847546 CTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGGAATGCCTTCTTTATC 847487 Query 44245 CGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 ||||| ||||| | ||| | || || || | | ||| ||||| | || || | Sbjct 847486 TTGAATCTT-TGCTTTGACATTCTCAATCGTATCCGATGGTTCAACCTCAAGGGTGATGG 847428 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT-GTGAAT 44346 | || ||||| | || || ||||||||||||||| | |||||| Sbjct 847427 TTTTACCCGTCAATGTTTTGACGAAGATTTGCATGTTGGTGAAT 847384 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||||||||||||||| ||| | ||| | || || |||||||| || || ||| Sbjct 621802 TCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGCTGCTTTCCAGCGAAG 621861 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| ||||| |||| || | |||||||| || ||||| ||| | || Sbjct 621862 ATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTAACATTT 621921 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||| | | ||| || || | || || ||||| || || | || || ||| Sbjct 621922 TCAATCGTGTCTGATGGTTCAACTTCAAGAGTGATGGTCTTGCCAGTCAAAGTTTTGACG 621981 Query 44327 AAGATTTGCATG 44338 |||||||||||| Sbjct 621982 AAGATTTGCATG 621993 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || ||||| |||||||| ||| | |||| | || || || ||||| || || ||| Sbjct 645784 TCTTTTTGAATGTTGTAGTCGCTCAAAGTGCGCCCATCTTCGAGTTGCTTTCCAGCGAAG 645725 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| ||||| |||| || | |||||||| || ||||| ||| | || Sbjct 645724 ATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTT 645665 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | | ||| || || | || || ||||| || || | || || ||| Sbjct 645664 TCAATGGTGTCTGATGGTTCAACTTCAAGAGTGATAGTCTTGCCAGTCAAAGTTTTAACG 645605 Query 44327 AAGATTTGCATG 44338 |||||||||||| Sbjct 645604 AAGATTTGCATG 645593 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||||||||||||||| ||| | ||| | || || || ||||| || || ||| Sbjct 646924 TCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAG 646865 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| ||||| |||| || | |||||||| || ||||| ||| | || Sbjct 646864 ATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTAACATTT 646805 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||| | | ||| || || | || || ||||| || || | || || ||| Sbjct 646804 TCAATCGTGTCTGATGGTTCAACTTCAAGAGTGATGGTCTTGCCAGTCAAAGTTTTGACG 646745 Query 44327 AAGATTTGCATG 44338 |||||||||||| Sbjct 646744 AAGATTTGCATG 646733 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||||||||||||||| ||| | ||| | || || || ||||| || || ||| Sbjct 622258 TCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAG 622317 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| ||||| |||| || | |||||||| || ||||| ||| | || Sbjct 622318 ATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTT 622377 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | | ||| || || | || || ||||| || || | || || ||| Sbjct 622378 TCAATGGTGTCAGATGGTTCGACTTCAAGGGTGATAGTCTTGCCGGTCAAAGTTTTGACG 622437 Query 44327 AAGATTTGCAT 44337 || |||||||| Sbjct 622438 AAAATTTGCAT 622448 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || |||||||||||||| ||| | ||| | || || || ||||| || || || Sbjct 646468 TCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAA 646409 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| ||||| |||| || | |||||||| || ||||| ||| | || Sbjct 646408 ATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTAACATTT 646349 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | | ||| || || | || || ||||| || || | || || ||| Sbjct 646348 TCAATGGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTTGCCGGTCAATGTTTTGACG 646289 Query 44327 AAGATTTGCATG 44338 |||||||||||| Sbjct 646288 AAGATTTGCATG 646277 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || ||||| |||||||| ||| | ||| | || || || ||||| || || ||| Sbjct 646696 TCTTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAG 646637 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| ||||| |||| || | |||||||| || ||||| ||| | || Sbjct 646636 ATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGGATCTTTGCCTTGACGTTT 646577 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | | ||| || || | || || ||||| || || | || || ||| Sbjct 646576 TCGATGGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACG 646517 Query 44327 AAGATTTGCATG 44338 |||||||||||| Sbjct 646516 AAGATTTGCATG 646505 >seq55 Length=2529122 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || ||||| ||| ||||| || ||||| || || || || |||| || Sbjct 2062110 CACAAGATGAAGTGTGGATTCCTTCTGAATGTTATAGTCACTAAGAGTACGACCGTCTTC 2062051 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 | ||||| || |||||||||||||| |||||||||| ||| | ||||||||| || Sbjct 2062050 TAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTGTCTTG 2061991 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | || | || || || | | || || || | || || ||||| Sbjct 2061990 GATCTTAGCCTTGACATTTTCAATTGTATCTGATGGCTCGACTTCGAGAGTGATAGTCTT 2061931 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| || ||||||||||||||||| Sbjct 2061930 GCCAGTGAGAGTTTTCACGAAGATTTGCAT 2061901 >seq37 Length=1894237 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || |||||||||||||| ||| | ||| | || || || ||||| || || ||| Sbjct 798520 TCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAG 798579 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| ||||| |||| || | |||||||| || ||||| ||| | || || Sbjct 798580 ATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTT-TGCCTTAACATT 798638 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | |||||||| | | ||| ||||| | || || ||||| || || | || || || Sbjct 798639 CTCAATGGTGTCAGATGGTTCAACCTCAAGAGTGATGGTCTTGCCAGTCAAAGTTTTGAC 798698 Query 44326 GAAGATTTGCATG 44338 ||||||||||||| Sbjct 798699 GAAGATTTGCATG 798711 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||| |||||||| ||| | ||| | || || || ||||| || || ||| Sbjct 798748 TCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGGCCATCTTCGAGTTGCTTTCCAGCGAAG 798807 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| |||||||||| || | |||||||| || ||||| ||| | || Sbjct 798808 ATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTT 798867 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | | ||| || || | || || ||||| || || | || || ||| Sbjct 798868 TCAATGGTGTCTGATGGTTCAACTTCAAGAGTGATAGTCTTGCCAGTCAAAGTTTTAACG 798927 Query 44327 AAGATTTGCATG 44338 |||||||||||| Sbjct 798928 AAGATTTGCATG 798939 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||||||||||||||| ||| | ||| | || || || ||||| || || ||| Sbjct 798292 TCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAG 798351 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||||| ||||| |||| || | |||||||| || ||||| ||| | || Sbjct 798352 TTCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGGATCTTTGCCTTGACGTTT 798411 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | | ||| || || | || || ||||| || || | || || ||| Sbjct 798412 TCGATGGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACG 798471 Query 44327 AAGATTTGCATG 44338 |||||||||||| Sbjct 798472 AAGATTTGCATG 798483 >seq889 Length=890 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||| |||||||| ||| | ||| | || || || ||||| || || ||| Sbjct 278 TCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAG 219 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| ||||| |||| || | |||||||| || ||||| |||| | ||| Sbjct 218 ATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTG-GCTTTGACGTT 160 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | | ||| || || | || || ||||| || || | ||||| || Sbjct 159 TTCAATGGTGTCCGATGGTTCAACTTCAAGAGTGATAGTCTTGCCAGTCAAAGTCTTGAC 100 Query 44326 GAAGATTTGCAT 44337 |||||||||||| Sbjct 99 GAAGATTTGCAT 88 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359886142617771