Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1361 212 6e-50 >seq1361 Length=478162 Score = 212 bits (234), Expect = 6e-50 Identities = 620/951 (65%), Gaps = 73/951 (8%) Strand=Plus/Minus Query 15895 AGAAGCAACACCCATTCTTTGG-TAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTC 15953 || |||||| ||| | ||| | || |||| ||| ||||| ||||| || ||||| | Sbjct 113272 AGTAGCAACGCCCGT-CTTCGCATATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGC 113214 Query 15954 CCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAG-AG 16012 | ||||| ||||| | ||||||||| ||| ||||| || | | |||| || | Sbjct 113213 CTTCTAATGATATTTGTTCCATAAATGGAAATGGATTTGTCGAATTATATATTTTCTCAA 113154 Query 16013 TACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCG 16072 ||||| | ||| || || | |||||||||||||||||| ||||| ||||||| | Sbjct 113153 TACCCAA-TTCACCAAGCAAACGATCTGCTACAAATTCTATGTATTGTGACATTAAATTA 113095 Query 16073 CAATTAATTCCTAT-AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCAC 16131 ||||| || |||| || || ||| || || | | ||||||||||| ||||||||| Sbjct 113094 CAATTCATACCTAACAAATC-TACAGGTAGTGACTCTGTTAAAAATTCTTGTTCTATTTT 113036 Query 16132 AACCGCTTCTTTAATGATATCGGTGGCTC-GTGTTTCAGACGGTGTATGGTTTAGGTGTT 16190 ||| || ||| || || || | | || || | ||| | || | || | Sbjct 113035 AACGGCGTCTCGGATTATTTCTACAACACAGTCCTT-TGTTGGTTTTTGTACCAAATGCT 112977 Query 16191 TAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGG 16250 | ||||||| ||| || ||||| ||||||| ||||| || | || | |||||| | Sbjct 112976 TGAACATTAAACAAGCAAAGTCACAATGTAAACCTTCATCGCGTGAAATTAATTCGTTTG 112917 Query 16251 AAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGA 16308 |||| || | || |||||| || |||||||||| ||| ||||| | ||||| || Sbjct 112916 AAAAGGTCAGTCCCGGCATTAAGCCACGTTTCTTTAGCCAAAATATTGATGCAAAACTGC 112857 Query 16309 CCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC 16368 | | |||| |||||||| ||||||| ||||| || |||| ||||| || | || || Sbjct 112856 CACTGAAA--AATATACCTTCAACAGCCGCAAATGCAATTATACGTTCACCGAATGTTGC 112799 Query 16369 ATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGT 16428 |||| | ||||| ||| |||| || || || | |||| || ||| || Sbjct 112798 TGTTTTACTTGATATCCAATTCAACGCCCAGTCTGCCTTCTTCTTTACGCACGGCATTGT 112739 Query 16429 TTCTATGGCCTTAAACAATT--TCTCT--------------TT--------------TTC 16458 ||| || || ||||| || | ||||| || || Sbjct 112738 TTCAATTGCATTAAATAAATAATCTCTGATAACAAAAACAATTGAATTTTTAATTAATTA 112679 Query 16459 CTGAA-TATCGATT--ATATAC------------------------GTATCAATCAGTAA 16491 ||||| ||| ||| ||| || |||| |||| | | Sbjct 112678 CTGAATTATAAATTGAATAAACTCACCGTTCTGCTGGATCCTTGATGTATGTATCAATCA 112619 Query 16492 A----CTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATC 16547 | |||||||||||||| ||||| || || || || || || || ||||||||||||| Sbjct 112618 AGATACTGTACATTTCTGAATGTATATTTTCAATAGCAATTTGGAAGCCATAGAAGCATC 112559 Query 16548 GAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATAC 16607 ||| || | | ||| |||||| | ||||||||| | | || ||||| || |||| Sbjct 112558 TAGCTTCAGTAACTTGCACTTCCTGGCTAAATCGTTCAACTAAATTTTCATTAACAATAC 112499 Query 16608 CGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA 16667 | || ||| |||||||| || | | ||| || ||| | |||| | | | | Sbjct 112498 CATCGGATGCTGCAAAAAATGCAAGAACGTGTGAGATAAAAAACCTTTCTTGATCGTTCA 112439 Query 16668 GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAG 16727 | | |||||||| | ||| || | |||| | ||||||||| ||||| || | Sbjct 112438 GTTTCTGCCAATCCTGTAAGTCATGCGATAAGTTTACTTCTTCTACTGTCCAGAACGATG 112379 Query 16728 CCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778 | | |||||||||||||||| ||| || || | ||||| || ||||||| Sbjct 112378 CTTCAGCCTTTTTATACATTTGCCATATGTCTTGATATTGAATTGGAAATA 112328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511403327878240