Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq981 105 6e-18
seq314 96.9 3e-15
seq1282 93.3 4e-14
seq1524 86.0 5e-12
>seq981
Length=59034
Score = 105 bits (116), Expect = 6e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|| ||||| || ||| | ||||||||||| || |||||||| ||| || ||||||
Sbjct 46708 AAGATGCAGATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTAGAGGTGGAACCA 46767
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
|||| || | | || | || ||||| |||||||| || | || ||||
Sbjct 46768 TCAGATACAATCGAAAATGTGAAAGCCAAAATCCAAGATAAAGAGGGCATTCCACCAGAT 46827
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|||||| | | ||||| || || || ||| |||||||| | || || |||| |||
Sbjct 46828 CAACAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCCGTACGTTGTCCGACTAC 46887
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176
||||| |||||||| || || |||||| ||||||| ||
Sbjct 46888 AATATCCAGAAGGAGTCAACCCTTCACTTGGTGTTGCG 46925
>seq314
Length=315434
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || || | || || | ||||| |||||||||||| |||| ||||| |
Sbjct 276036 ATGCAGATCTTTGTGAAGACTCTTACGGGTAAAACCATTACCCTCGAAGTTGAACCATCC 276095
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | || | ||| || ||| ||||||||||| | || |||||||
Sbjct 276096 GATACTATCGAAAATGTAAAGGCCAAGATTCAAGATAAAGAAGGCATTCCACCAGATCAA 276155
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139
||| | | |||||||| || |||||| |||||||| || | ||| | || ||||
Sbjct 276156 CAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACCTTAT--CAGACTACA 276213
Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
| || || ||||||||||| ||||| ||||||| ||| | || || ||
Sbjct 276214 ACATCCAAAAGGAATCTACCCTTCATTTGGTGTTGCGACTTCGTGGTGG 276262
>seq1282
Length=29674
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| ||| ||||||| ||||| || ||||||||||| ||| ||||| |
Sbjct 29019 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTAGAACCTTCT 28960
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | || ||||| || || || || |||||| | || ||||||
Sbjct 28959 GATACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCAGATCAG 28900
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139
||| | | || ||||| || |||||||| |||||| || | | ||| | || ||||
Sbjct 28899 CAACGTTTGATTTTTGCTGGTAAACAACTTGAAGATGGTCGTACATTAT--CTGACTACA 28842
Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
| || || || ||||| ||||| || | || ||||| |||| |||||
Sbjct 28841 ACATCCAAAAAGAATCGACTCTGCATTTAGTATTACGTCTACGTGGAGG 28793
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| ||| ||||||| ||||| || ||||||||||| ||| ||||| |
Sbjct 29247 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29188
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | ||||| || || || || |||||| | ||| ||||||
Sbjct 29187 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 29128
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
||| | | |||||||| ||||| ||||| |||||| || || | || |||||
Sbjct 29127 CAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAAC 29068
Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164
|| || ||||| |||||||| ||
Sbjct 29067 ATCCAAAAGGAGTCTACTCTCCA 29045
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| ||| ||||||| ||||| || ||||||||||| ||| ||||| |
Sbjct 29475 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29416
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | ||||| || || || || |||||| | ||| ||||||
Sbjct 29415 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 29356
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
||| | | |||||||| ||||| ||||| |||||| || || | || |||||
Sbjct 29355 CAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAAC 29296
Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164
|| || ||||| |||||||| ||
Sbjct 29295 ATCCAAAAGGAGTCTACTCTCCA 29273
>seq1524
Length=218836
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||||||||| ||||||| ||||| || ||||||||||| ||| ||||| |
Sbjct 304 ATGCAAATATTTGTCAAAACTTTGACTGGTAAAACCATTACTTTAGAAGTAGAACCTTCT 245
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | ||||| || || || || |||||| | || ||||||
Sbjct 244 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAG 185
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| | | || || || || || ||||| |||||| || || ||||||||||
Sbjct 184 CAGCGTTTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGTACATTGTCCGATTACAAC 125
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176
|| |||||||| |||||||||||| | || || ||
Sbjct 124 ATCCAGAAGGAGTCTACTCTTCACTTAGTATTGCG 90
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428326958362460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |