Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq981 105 6e-18 seq314 96.9 3e-15 seq1282 93.3 4e-14 seq1524 86.0 5e-12 >seq981 Length=59034 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || ||||| || ||| | ||||||||||| || |||||||| ||| || |||||| Sbjct 46708 AAGATGCAGATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTAGAGGTGGAACCA 46767 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| || | | || | || ||||| |||||||| || | || |||| Sbjct 46768 TCAGATACAATCGAAAATGTGAAAGCCAAAATCCAAGATAAAGAGGGCATTCCACCAGAT 46827 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 |||||| | | ||||| || || || ||| |||||||| | || || |||| ||| Sbjct 46828 CAACAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCCGTACGTTGTCCGACTAC 46887 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||| |||||||| || || |||||| ||||||| || Sbjct 46888 AATATCCAGAAGGAGTCAACCCTTCACTTGGTGTTGCG 46925 >seq314 Length=315434 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || | ||||| |||||||||||| |||| ||||| | Sbjct 276036 ATGCAGATCTTTGTGAAGACTCTTACGGGTAAAACCATTACCCTCGAAGTTGAACCATCC 276095 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || ||| ||||||||||| | || ||||||| Sbjct 276096 GATACTATCGAAAATGTAAAGGCCAAGATTCAAGATAAAGAAGGCATTCCACCAGATCAA 276155 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||| | | |||||||| || |||||| |||||||| || | ||| | || |||| Sbjct 276156 CAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACCTTAT--CAGACTACA 276213 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | || || ||||||||||| ||||| ||||||| ||| | || || || Sbjct 276214 ACATCCAAAAGGAATCTACCCTTCATTTGGTGTTGCGACTTCGTGGTGG 276262 >seq1282 Length=29674 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| ||||| || ||||||||||| ||| ||||| | Sbjct 29019 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTAGAACCTTCT 28960 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| || || || || |||||| | || |||||| Sbjct 28959 GATACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCAGATCAG 28900 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||| | | || ||||| || |||||||| |||||| || | | ||| | || |||| Sbjct 28899 CAACGTTTGATTTTTGCTGGTAAACAACTTGAAGATGGTCGTACATTAT--CTGACTACA 28842 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | || || || ||||| ||||| || | || ||||| |||| ||||| Sbjct 28841 ACATCCAAAAAGAATCGACTCTGCATTTAGTATTACGTCTACGTGGAGG 28793 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| ||||| || ||||||||||| ||| ||||| | Sbjct 29247 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29188 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | ||||| || || || || |||||| | ||| |||||| Sbjct 29187 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 29128 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | |||||||| ||||| ||||| |||||| || || | || ||||| Sbjct 29127 CAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAAC 29068 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 || || ||||| |||||||| || Sbjct 29067 ATCCAAAAGGAGTCTACTCTCCA 29045 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| ||||| || ||||||||||| ||| ||||| | Sbjct 29475 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29416 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | ||||| || || || || |||||| | ||| |||||| Sbjct 29415 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 29356 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | |||||||| ||||| ||||| |||||| || || | || ||||| Sbjct 29355 CAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAAC 29296 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 || || ||||| |||||||| || Sbjct 29295 ATCCAAAAGGAGTCTACTCTCCA 29273 >seq1524 Length=218836 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| ||||||| ||||| || ||||||||||| ||| ||||| | Sbjct 304 ATGCAAATATTTGTCAAAACTTTGACTGGTAAAACCATTACTTTAGAAGTAGAACCTTCT 245 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | ||||| || || || || |||||| | || |||||| Sbjct 244 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAG 185 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | | || || || || || ||||| |||||| || || |||||||||| Sbjct 184 CAGCGTTTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGTACATTGTCCGATTACAAC 125 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || |||||||| |||||||||||| | || || || Sbjct 124 ATCCAGAAGGAGTCTACTCTTCACTTAGTATTGCG 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428326958362460