Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1361 134 1e-26
seq314 100 3e-16
seq1282 95.1 1e-14
seq981 91.5 2e-13
>seq1361
Length=478162
Score = 134 bits (148), Expect = 1e-26
Identities = 194/272 (71%), Gaps = 4/272 (1%)
Strand=Plus/Plus
Query 116944 TTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCG 117003
||| || || || || || || ||||||||||| || ||||||| || |||||| ||
Sbjct 112720 TTTATTTAATGCAATTGAAACAATGCCGTGCGTAAAGAAGAAGGCAGACTGGGCGTTGAA 112779
Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063
||||| | | | | || | ||||| || || | | || || ||||| || ||
Sbjct 112780 TTGGATATCAAGTAAAACAGCAACATTCGGTGAACGTATAATTGCATTTGCGGCTGTTGA 112839
Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123
|| | || || |||||||| || | ||||||||||| |||||||| ||| | ||
Sbjct 112840 AGGTATATTTTTCAGTGGCAGTTTTGCATCAATATTTTGGCTAAAGAAACGTGGCTTAAT 112899
Query 117124 GCCCGGCCTGAC--TTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGAC 117181
||| || ||||| ||||| ||||| | || || | || || ||| | ||||| |||
Sbjct 112900 GCCGGGACTGACCTTTTCA--AACGAATTAATTTCACGCGATGAAGGTTTACATTGTGAC 112957
Query 117182 TTTGCCTGTTTGCTGTTCAAGCATTTGGTGCA 117213
||||| ||||| |||||||||||||||| ||
Sbjct 112958 TTTGCTTGTTTAATGTTCAAGCATTTGGTACA 112989
Score = 114 bits (126), Expect = 1e-20
Identities = 223/323 (69%), Gaps = 6/323 (2%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|| ||||| ||||||| || || | || || || || || || || ||||| | |||
Sbjct 112291 GAACCGCTATTGCGCGATAATCCAAGACGTTTTGTTATATTTCCAATTCAATATCAAGAC 112350
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| ||||| |||||||| || || ||||||||||| || || || || || |
Sbjct 112351 ATATGGCAAATGTATAAAAAGGCTGAAGCATCGTTCTGGACAGTAGAAGAAGTAAACTTA 112410
Query 116696 TCCAAGGAC--ACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGC 116753
|| | ||| || || || ||| || ||||||| | || | ||| ||| |
Sbjct 112411 TCGCATGACTTAC-AG-GATTGGCAGAAACTGAACGATCAAGAAAGGTTTTTTATCTCAC 112468
Query 116754 ACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-T 116812
|||| || || ||||| || || ||| || || || || || ||| | || || || |
Sbjct 112469 ACGTTCTTGCATTTTTTGCAGCATCCGATGGTATTGTTAATGAAAATTTAGTTGAACGAT 112528
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
|| || ||||| ||||| || | || || | |||||||| ||||| || || || ||
Sbjct 112529 TTAGC-CAGGAAGTGCAAGTTACTGAAGCTAGATGCTTCTATGGCTTCCAAATTGCTATT 112587
Query 116873 GAGAACGTGCACTCGGAAATGTA 116895
|| || | || || ||||||||
Sbjct 112588 GAAAATATACATTCAGAAATGTA 112610
>seq314
Length=315434
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || ||||| |||||||| ||| |||| || ||| | ||
Sbjct 276036 ATGCAGATCTTTGTGAAGACTCTTACGGGTAAAACCATTACCCTCGAAGTTGAACCATCC 276095
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | ||| | |||| || |||| || ||||| ||||| || | || ||
Sbjct 276096 GATACTATCGAAAATGTAAAGGCCAAGATTCAAGATAAAGAAGGCATTCCACCAGATCAA 276155
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | |||| || || ||||| |||| || | |||||| | |||||||||
Sbjct 276156 CAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACCTTATCAGACTACAAC 276215
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||| ||||| | || || ||| | ||||||||
Sbjct 276216 ATCCAAAAGGAATCTACCCTTCATTTGGTGTTGCG 276250
>seq1282
Length=29674
Score = 95.1 bits (104), Expect = 1e-14
Identities = 152/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| | || || |||||||| || | || || ||| | |
Sbjct 29247 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29188
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | ||||| | |||| || || | ||||| || || || ||| | || ||
Sbjct 29187 GATACCATTGAAAACGTT-AAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCA 29129
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| | |||| || ||||| || || || || | || || | ||||||||
Sbjct 29128 GCAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAA 29069
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||| |||||| | || || ||| |||| |||||
Sbjct 29068 CATCCAAAAGGAGTCTACTCTCCATTTAGTATTGCG 29033
Score = 95.1 bits (104), Expect = 1e-14
Identities = 152/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| | || || |||||||| || | || || ||| | |
Sbjct 29475 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29416
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | ||||| | |||| || || | ||||| || || || ||| | || ||
Sbjct 29415 GATACCATTGAAAACGTT-AAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCA 29357
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| | |||| || ||||| || || || || | || || | ||||||||
Sbjct 29356 GCAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAA 29297
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||| |||||| | || || ||| |||| |||||
Sbjct 29296 CATCCAAAAGGAGTCTACTCTCCATTTAGTATTGCG 29261
>seq981
Length=59034
Score = 91.5 bits (100), Expect = 2e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| ||||| | || || |||||||||||| | || || ||| |
Sbjct 46708 AAGATGCAGATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTAGAGGTGGAACCA 46767
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| || | | ||| | || | ||||| | || ||||||||||| || | ||
Sbjct 46768 TCAGATACAATCGAAAATGTGAAAGCCAAAATCCAAGATAAAGAGGGCATTCCACCAGAT 46827
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
|| ||||| | |||| ||| || || || |||| || | || || | |||||||
Sbjct 46828 CAACAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCCGTACGTTGTCCGACTAC 46887
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|| |||||||||||| | || || || | ||||||||
Sbjct 46888 AATATCCAGAAGGAGTCAACCCTTCACTTGGTGTTGCG 46925
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515208045504320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |