Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1361 134 1e-26 seq314 100 3e-16 seq1282 95.1 1e-14 seq981 91.5 2e-13 >seq1361 Length=478162 Score = 134 bits (148), Expect = 1e-26 Identities = 194/272 (71%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 116944 TTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCG 117003 ||| || || || || || || ||||||||||| || ||||||| || |||||| || Sbjct 112720 TTTATTTAATGCAATTGAAACAATGCCGTGCGTAAAGAAGAAGGCAGACTGGGCGTTGAA 112779 Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||||| | | | | || | ||||| || || | | || || ||||| || || Sbjct 112780 TTGGATATCAAGTAAAACAGCAACATTCGGTGAACGTATAATTGCATTTGCGGCTGTTGA 112839 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 || | || || |||||||| || | ||||||||||| |||||||| ||| | || Sbjct 112840 AGGTATATTTTTCAGTGGCAGTTTTGCATCAATATTTTGGCTAAAGAAACGTGGCTTAAT 112899 Query 117124 GCCCGGCCTGAC--TTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGAC 117181 ||| || ||||| ||||| ||||| | || || | || || ||| | ||||| ||| Sbjct 112900 GCCGGGACTGACCTTTTCA--AACGAATTAATTTCACGCGATGAAGGTTTACATTGTGAC 112957 Query 117182 TTTGCCTGTTTGCTGTTCAAGCATTTGGTGCA 117213 ||||| ||||| |||||||||||||||| || Sbjct 112958 TTTGCTTGTTTAATGTTCAAGCATTTGGTACA 112989 Score = 114 bits (126), Expect = 1e-20 Identities = 223/323 (69%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||||| ||||||| || || | || || || || || || || ||||| | ||| Sbjct 112291 GAACCGCTATTGCGCGATAATCCAAGACGTTTTGTTATATTTCCAATTCAATATCAAGAC 112350 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||| |||||||| || || ||||||||||| || || || || || | Sbjct 112351 ATATGGCAAATGTATAAAAAGGCTGAAGCATCGTTCTGGACAGTAGAAGAAGTAAACTTA 112410 Query 116696 TCCAAGGAC--ACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGC 116753 || | ||| || || || ||| || ||||||| | || | ||| ||| | Sbjct 112411 TCGCATGACTTAC-AG-GATTGGCAGAAACTGAACGATCAAGAAAGGTTTTTTATCTCAC 112468 Query 116754 ACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-T 116812 |||| || || ||||| || || ||| || || || || || ||| | || || || | Sbjct 112469 ACGTTCTTGCATTTTTTGCAGCATCCGATGGTATTGTTAATGAAAATTTAGTTGAACGAT 112528 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || || ||||| ||||| || | || || | |||||||| ||||| || || || || Sbjct 112529 TTAGC-CAGGAAGTGCAAGTTACTGAAGCTAGATGCTTCTATGGCTTCCAAATTGCTATT 112587 Query 116873 GAGAACGTGCACTCGGAAATGTA 116895 || || | || || |||||||| Sbjct 112588 GAAAATATACATTCAGAAATGTA 112610 >seq314 Length=315434 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || ||||| |||||||| ||| |||| || ||| | || Sbjct 276036 ATGCAGATCTTTGTGAAGACTCTTACGGGTAAAACCATTACCCTCGAAGTTGAACCATCC 276095 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | |||| || |||| || ||||| ||||| || | || || Sbjct 276096 GATACTATCGAAAATGTAAAGGCCAAGATTCAAGATAAAGAAGGCATTCCACCAGATCAA 276155 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || || ||||| |||| || | |||||| | ||||||||| Sbjct 276156 CAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACCTTATCAGACTACAAC 276215 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| ||||| | || || ||| | |||||||| Sbjct 276216 ATCCAAAAGGAATCTACCCTTCATTTGGTGTTGCG 276250 >seq1282 Length=29674 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || |||||||| || | || || ||| | | Sbjct 29247 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29188 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | ||||| | |||| || || | ||||| || || || ||| | || || Sbjct 29187 GATACCATTGAAAACGTT-AAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCA 29129 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || ||||| || || || || | || || | |||||||| Sbjct 29128 GCAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAA 29069 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| |||||| | || || ||| |||| ||||| Sbjct 29068 CATCCAAAAGGAGTCTACTCTCCATTTAGTATTGCG 29033 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || |||||||| || | || || ||| | | Sbjct 29475 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29416 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | ||||| | |||| || || | ||||| || || || ||| | || || Sbjct 29415 GATACCATTGAAAACGTT-AAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCA 29357 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || ||||| || || || || | || || | |||||||| Sbjct 29356 GCAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAA 29297 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| |||||| | || || ||| |||| ||||| Sbjct 29296 CATCCAAAAGGAGTCTACTCTCCATTTAGTATTGCG 29261 >seq981 Length=59034 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| | || || |||||||||||| | || || ||| | Sbjct 46708 AAGATGCAGATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTAGAGGTGGAACCA 46767 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| | || | ||||| | || ||||||||||| || | || Sbjct 46768 TCAGATACAATCGAAAATGTGAAAGCCAAAATCCAAGATAAAGAGGGCATTCCACCAGAT 46827 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||||| | |||| ||| || || || |||| || | || || | ||||||| Sbjct 46828 CAACAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCCGTACGTTGTCCGACTAC 46887 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || |||||||||||| | || || || | |||||||| Sbjct 46888 AATATCCAGAAGGAGTCAACCCTTCACTTGGTGTTGCG 46925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208045504320