Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1606 168 1e-36 seq1282 136 6e-27 seq314 132 7e-26 seq644 131 3e-25 seq981 109 8e-19 seq1524 91.5 2e-13 seq599 86.0 9e-12 >seq1606 Length=54755 Score = 168 bits (186), Expect = 1e-36 Identities = 251/354 (71%), Gaps = 9/354 (3%) Strand=Plus/Plus Query 205435 TTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAAT 205494 |||| ||| ||||||||||||||||| || || || | |||||| || ||||||||| Sbjct 16892 TTTAGATTTGTTAAATGTGCAATCATGTATGTTAAGAGTGCATAACTGGCGACATTAAAT 16951 Query 205495 GGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTA 205554 |||||||| | |||||||||||||| ||||| || | |||||| | | ||| | Sbjct 16952 GGTACACCAAGTCCCATATCAGCTGACCTTTGGTAAAGTTGACACGATA---ATTCACCG 17008 Query 205555 TTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCT 205614 ||| |||| |||||||||| |||||| ||||| || | |||| | | | | | Sbjct 17009 TTAGCTACAAAGAATTGTACAAGACAATGGCAAGGCGGCAATGCCATTTGTGGTATTTGT 17068 Query 205615 ATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCA---GGtttattttttatttta 205671 || |||||||| || | | || ||| | | | ||| || || | ||| || || Sbjct 17069 ATTGGATTCCATGCAG---ACATGATAATACGACGATCAGTTGGATTTTCTTTAATCTTT 17125 Query 205672 tttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATA 205731 ||||| | | | || |||||||| || ||| || |||| |||| || | || Sbjct 17126 TTTATCACTTCGGCTAGTTGATCAACCCCATGACCTGAGTAATCAGTATGACAATTATTA 17185 Query 205732 TATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785 || | || |||||||| | |||||||||||| ||||| ||||| ||||||||| Sbjct 17186 TAGTCGGCGCCAAAATGTCTCCATTGAAAACCGTAAACGGGACCCAAATCACCT 17239 >seq1282 Length=29674 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | || || ||||| || ||| |||| | ||| | | Sbjct 29019 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTAGAACCTTCT 28960 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || || ||||| || |||||||| ||||| ||||| Sbjct 28959 GATACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCAGATCAG 28900 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || |||||| | || ||| |||| |||||| || || || Sbjct 28899 CAACGTTTGATTTTTGCTGGTAAACAACTTGAAGATGGTCGTACATTATCTGACTACAAC 28840 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||| ||||||| || |||||| |||| || ||||| Sbjct 28839 ATCCAAAAAGAATCGACTCTGCATTTAGTATTACGTCTACGTGGAGGTAT 28790 Score = 98.7 bits (108), Expect = 2e-15 Identities = 112/149 (75%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || || || || ||||| || || || ||||||||| | | |||||||| || ||| Sbjct 28707 AAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAACAACGTTTAATTTTTGCTGGTAAA 28648 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | |||||| | || |||||| ||||||||||| || || ||||| || | ||| Sbjct 28647 CAACTTGAGGATGGACGCACATTATCGGATTATAATATCCAGAAGGAATCTACACTCCAT 28588 Query 124743 TTGGTTTTACGTTTACGAGGTGG-TATTA 124770 ||||| | ||||| |||| || ||||| Sbjct 28587 TTGGTCCTTCGTTTGAGAGGCGGCTATTA 28559 >seq314 Length=315434 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || ||||| || || | || ||||| || Sbjct 276036 ATGCAGATCTTTGTGAAGACTCTTACGGGTAAAACCATTACCCTCGAAGTTGAACCATCC 276095 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| |||| || ||||||||||||||||| || ||||| |||||| Sbjct 276096 GATACTATCGAAAATGTAAAGGCCAAGATTCAAGATAAAGAAGGCATTCCACCAGATCAA 276155 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || |||||||| || ||| |||| || ||| ||| || || Sbjct 276156 CAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACCTTATCAGACTACAAC 276215 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||| ||||| || | |||||||| || || | || |||||| Sbjct 276216 ATCCAAAAGGAATCTACCCTTCATTTGGTGTTGCGACTTCGTGGTGGT 276263 >seq644 Length=264193 Score = 131 bits (144), Expect = 3e-25 Identities = 370/558 (66%), Gaps = 13/558 (2%) Strand=Plus/Minus Query 203112 TATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTT 203171 |||| |||| || ||| ||| | ||||||| | || || | || | |||| || || | Sbjct 214956 TATGGTCATCTAATGTCTTTCTCGCCCAATCAGGTGCTCCTTCTAGACTATCATAGTTAT 214897 Query 203172 CATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAAAAAA 203231 | ||||| | ||| ||||||| ||||||| ||| || || ||||||||||||||| Sbjct 214896 CGTTATAGAAGCAATAATTATCGGATAGTTCCCGACGTATTATTGCTTCTTCACAAAAAG 214837 Query 203232 CTTCTACCGATTTAGGATATAATTTTTT-ATATTTGTTAATTTCTAATATTATTCTTTGA 203290 | || | | ||| | | |||||| |||| || | |||| || | |||| Sbjct 214836 CCTC-AACACTTTTCTTTGCAGTTTTTTGGTATTGATTCACAGCTAAAATACACCGTTGA 214778 Query 203291 GTTGAAATTTGACCAAAATGTATCCATGGTGATAAATTACTTATTGCATTAGCATTTGGA 203350 ||| ||||| |||||||| | ||||||||||||||| ||||| | || ||| Sbjct 214777 ACTGATATTTGGCCAAAATGGAACCATGGTGATAAATTTGAGATTGCTTCTTCAAGAGGA 214718 Query 203351 TCATTTCtttttttagcataatcttttaatctattttgtataaatatatctaatatttta 203410 ||||||| ||||| |||||| ||||||| |||||| | ||||| | Sbjct 214717 TCATTTCGTTTTTCTTCATAATTCTTTAATCGGAGAGATATAAAATTCTCTAACTCACGA 214658 Query 203411 aatgcatattttGTA-CCAGATTTTGCCCAAGAAACAGGTTTAACATTTCTATCAA-TAT 203468 | || ||||| |||| |||||| || || | ||||| || Sbjct 214657 ACAGC-GCCCTTGTAGCCAGGCACAGCCCAATCTACTTCCCCCACTGATTGATCAACGAT 214599 Query 203469 TTAATGATTGTTCTGCttttttccaatta---ttatttattttaatatatgtattataag 203525 | |||||| | ||| |||||||| ||| || | | ||| || | || | ||| Sbjct 214598 TACATGATT-ATATGCATTTTTCCAGTTACATTTTTCAAATTTTATTTCACAATCAAAAG 214540 Query 203526 tatgtttaataataggtataaattCAGTTAAATA--TTCTGATAATTTATAATTTATTTT 203583 |||||| || | | | ||||||||||||||| | || || ||| || || || Sbjct 214539 GATGTTTTATTAACGATGGAAATTCAGTTAAATAAGTACT--TAGTTTGCTGTTAATCTT 214482 Query 203584 ATTTCTAATGGTTTTTGCAGAATATTCTAATTTATTACTAGCAATCCAACATGGTACAAT 203643 |||||| || ||| |||| | ||||||| |||| | ||| |||| ||||||||| Sbjct 214481 ATTTCTTATTGTTCTTGCGGCATATTCTTGTTTAGCAGAAGCTTCCCAAACTGGTACAAT 214422 Query 203644 ATTATGTGAATCAACTTG 203661 |||||| ||||| || || Sbjct 214421 ATTATGAGAATCCACCTG 214404 Score = 87.8 bits (96), Expect = 3e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 202747 AATAAATAAATCAACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTT 202806 |||||| |||||||||| ||||| ||||| || || |||| |||||| | ||||| Sbjct 215435 AATAAAAGAATCAACATCGAATTTTCGTCTGCAACCAGTATAAGCCATATAACGTATTTT 215376 Query 202807 ACCAAATATTGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACA 202866 ||||| | | ||||||||||||| | |||||| | |||||||| ||||| | ||| Sbjct 215375 TCCAAACACTTCTCTTTCTTTCCATCCCTGATCATGTAGTCCACAAATAGACCAAAGACA 215316 Query 202867 TCC 202869 || Sbjct 215315 ACC 215313 >seq981 Length=59034 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || ||| | || || ||||| || || ||||| | ||| || Sbjct 46711 ATGCAGATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTAGAGGTGGAACCATCA 46770 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| ||| | ||| ||||| ||||||||||| || || ||||| |||||| Sbjct 46771 GATACAATCGAAAATGTGAAAGCCAAAATCCAAGATAAAGAGGGCATTCCACCAGATCAA 46830 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || || || ||||| || ||| | || || || || || ||| Sbjct 46831 CAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCCGTACGTTGTCCGACTACAAT 46890 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | || ||||| || ||| | || |||||||| Sbjct 46891 ATCCAGAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTCCGTGGTGGTAT 46940 >seq1524 Length=218836 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || || | || || ||||| || ||| |||| | ||| | | Sbjct 304 ATGCAAATATTTGTCAAAACTTTGACTGGTAAAACCATTACTTTAGAAGTAGAACCTTCT 245 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || || || ||||| || |||||||| || || ||||| Sbjct 244 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAG 185 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || || || ||| | || ||| | || ||||| ||||| || Sbjct 184 CAGCGTTTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGTACATTGTCCGATTACAAC 125 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || || || || ||| | || || || || ||| | || |||||||| ||| || Sbjct 124 ATCCAGAAGGAGTCTACTCTTCACTTAGTATTGCGTCTTCGTGGTGGTATGCAAATTT 67 >seq599 Length=5473 Score = 86.0 bits (94), Expect = 9e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||| | | || || || || ||||||||||||||| |||| ||||| ||||||| Sbjct 1 AACAACGTTTAATCTTCGCTGGTAAACAATTAGAGGATGGTCGTACATTGTCCGATTATA 60 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | |||||||| ||||| || | || ||||| |||||| | || ||||| | ||| || Sbjct 61 ACATTCAAAAGGAATCTACCCTCCACTTGGTGTTACGTCTTCGTGGTGGCAACTAAATTT 120 Query 124777 CATAA 124781 | ||| Sbjct 121 CCTAA 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755439644377600