Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1282 95.1 2e-14 seq314 95.1 2e-14 seq644 87.8 3e-12 >seq1282 Length=29674 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/213 (68%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 |||||| ||||| | ||| |||||||| || || || || || | || | | ||| Sbjct 28807 TAATACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGATAATGTACGACCATC 28866 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || | |||||| |||||||||||||| | ||||||||| || ||||| ||||| || || Sbjct 28867 TTCAAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTGTC 28926 Query 146185 TTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGT 146244 ||| ||||| ||| ||||||||||| || || || Sbjct 28927 TTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGT 28986 Query 146245 TTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||| || || || ||||| | ||| |||||||| Sbjct 28987 TTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29019 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | |||||||| || ||||||||||| || | || | | ||| || Sbjct 28583 ACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATCCGATAATGTGCGTCCATCCTCA 28642 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||| ||||||||||| || | ||| ||||| |||||||| ||||| || || || Sbjct 28643 AGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCCTG 28701 >seq314 Length=315434 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || |||||||| | |||||||| || || || || ||||| Sbjct 276262 CCACCACGAAGTCGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGAT 276203 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || |||||||| || ||||| ||||| | ||| ||||| || ||| Sbjct 276202 AAGGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGA 276143 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 276142 ATGCCTTCTTTATCTTG 276126 >seq644 Length=264193 Score = 87.8 bits (96), Expect = 3e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 27418 GTAGATTCTCATAATATTATACCAGTATGGGTAACTTCAGATAAACAGGAATATAACGCA 27477 || ||||||||||||||| ||||||| |||| | |||| | |||||| |||||| |||| Sbjct 214407 GTGGATTCTCATAATATTGTACCAGTTTGGGAAGCTTCTGCTAAACAAGAATATGCCGCA 214466 Query 27478 AGAACAATAAGGATTAAAATAAA 27500 ||||||||||| | ||| || || Sbjct 214467 AGAACAATAAGAAATAAGATTAA 214489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743510302653440