Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1361 306 3e-78 >seq1361 Length=478162 Score = 306 bits (338), Expect = 3e-78 Identities = 397/540 (74%), Gaps = 8/540 (1%) Strand=Plus/Minus Query 15949 ATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCAT 16008 |||||||| |||| |||||||||||||||| ||||| ||||||||||| || | |||||| Sbjct 113251 ATATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCTTCTAATGATATTTGTTCCAT 113192 Query 16009 AAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT--CCCAATTCCAACAAT-AA 16065 ||| ||| |||||| | ||| ||| ||||| || || |||||||| | ||| || Sbjct 113191 AAATGGAAATGGATTTGTCGAATTATA-TATTT-TCTCAATACCCAATTC-ACCAAGCAA 113135 Query 16066 TCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 16125 | ||| || ||||||||||| || ||| |||||||| ||| ||||| |||| || | Sbjct 113134 ACGATCTGCTACAAATTCTATGTATTGTGACATTAAATTACAATTCATACCTAACAAATC 113075 Query 16126 AACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATC 16185 ||||| | || ||||||||||| | || |||||| ||||| || || |||||| || Sbjct 113074 TACAGGTAGTGACTCTGTTAAAAATTCTTGTTCTATTTTAACGGCGTCTCGGATTATTTC 113015 Query 16186 TCTTACTACACTA-TTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAAT 16244 | || ||| | ||| || | || || || || ||||||| ||||||||| | Sbjct 113014 TACAAC-ACAGTCCTTTGTTGGTTTTTGTACCAAATGCTTGAACATTAAACAAGCAAAGT 112956 Query 16245 CACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTA 16304 ||||||| || ||||| || | ||||| ||||||||||| || || || ||||||| Sbjct 112955 CACAATGTAAACCTTCATCGCGTGAAATTAATTCGTTTGAAAAGGTCAGTCCCGGCATTA 112896 Query 16305 GTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAA 16364 || ||||| || | ||||||||| | ||||| ||| || ||||||||||||| Sbjct 112895 AGCCACGTTTCTTTAGCCAAAATATTGATGCAAAACTGCCACTGAAAAATATACCTTCAA 112836 Query 16365 CTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttt 16424 | || |||||||||| | || |||||| | ||| |||||||| |||||| || Sbjct 112835 CAGCCGCAAATGCAATTATACGTTCACCGAATGTTGCTGTTTTACTTGATATCCAATTCA 112776 Query 16425 tagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAT 16484 ||||| | ||| || | || || || ||| | || ||||||||||||||||||| Sbjct 112775 ACGCCCAGTCTGCCTTCTTCTTTACGCACGGCATTGTTTCAATTGCATTAAATAAATAAT 112716 Score = 179 bits (198), Expect = 3e-40 Identities = 227/312 (73%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || || ||||| || | | ||| |||||||||||||| ||||| || || || || || Sbjct 112634 ATGTATGTATCAATCAAGATACTGTACATTTCTGAATGTATATTTTCAATAGCAATTTGG 112575 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAG 16624 || ||||| |||||||||||||| | | ||| ||||| | ||| | ||| |||| Sbjct 112574 AAGCCATAGAAGCATCTAGCTTCAGTAACTTGCACTTCCTGGCTAAATCGTTCAACTAAA 112515 Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttt 16684 ||||| ||||| || |||||| ||||||||||| ||||| | |||| |||||| Sbjct 112514 TTTTCATTAACAATACCATCGGATGCTGCAAAAAATGCAAGAACGTGTGAGATAAAAAAC 112455 Query 16685 ttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCT 16744 |||| | ||| ||||| ||| || || || | ||||| | || |||||| Sbjct 112454 CTTTCTTGATCGTTCAGTTTCTGCCAATCCTGTAAGTCATGCGATAAGTTTACTTCTTCT 112395 Query 16745 ACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATA 16804 || ||||| || || || |||||||||||||||||| ||||||||||| || ||| Sbjct 112394 ACTGTCCAGAACGATGCTTCAGCCTTTTTATACATTTGCCATATGTCTTGATATTGAATT 112335 Query 16805 GGAAACACAACA 16816 ||||| | |||| Sbjct 112334 GGAAATATAACA 112323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462501986615200