Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq1361 306 3e-78
>seq1361
Length=478162
Score = 306 bits (338), Expect = 3e-78
Identities = 397/540 (74%), Gaps = 8/540 (1%)
Strand=Plus/Minus
Query 15949 ATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCAT 16008
|||||||| |||| |||||||||||||||| ||||| ||||||||||| || | ||||||
Sbjct 113251 ATATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCTTCTAATGATATTTGTTCCAT 113192
Query 16009 AAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT--CCCAATTCCAACAAT-AA 16065
||| ||| |||||| | ||| ||| ||||| || || |||||||| | ||| ||
Sbjct 113191 AAATGGAAATGGATTTGTCGAATTATA-TATTT-TCTCAATACCCAATTC-ACCAAGCAA 113135
Query 16066 TCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 16125
| ||| || ||||||||||| || ||| |||||||| ||| ||||| |||| || |
Sbjct 113134 ACGATCTGCTACAAATTCTATGTATTGTGACATTAAATTACAATTCATACCTAACAAATC 113075
Query 16126 AACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATC 16185
||||| | || ||||||||||| | || |||||| ||||| || || |||||| ||
Sbjct 113074 TACAGGTAGTGACTCTGTTAAAAATTCTTGTTCTATTTTAACGGCGTCTCGGATTATTTC 113015
Query 16186 TCTTACTACACTA-TTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAAT 16244
| || ||| | ||| || | || || || || ||||||| ||||||||| |
Sbjct 113014 TACAAC-ACAGTCCTTTGTTGGTTTTTGTACCAAATGCTTGAACATTAAACAAGCAAAGT 112956
Query 16245 CACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTA 16304
||||||| || ||||| || | ||||| ||||||||||| || || || |||||||
Sbjct 112955 CACAATGTAAACCTTCATCGCGTGAAATTAATTCGTTTGAAAAGGTCAGTCCCGGCATTA 112896
Query 16305 GTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAA 16364
|| ||||| || | ||||||||| | ||||| ||| || |||||||||||||
Sbjct 112895 AGCCACGTTTCTTTAGCCAAAATATTGATGCAAAACTGCCACTGAAAAATATACCTTCAA 112836
Query 16365 CTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttt 16424
| || |||||||||| | || |||||| | ||| |||||||| |||||| ||
Sbjct 112835 CAGCCGCAAATGCAATTATACGTTCACCGAATGTTGCTGTTTTACTTGATATCCAATTCA 112776
Query 16425 tagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAT 16484
||||| | ||| || | || || || ||| | || |||||||||||||||||||
Sbjct 112775 ACGCCCAGTCTGCCTTCTTCTTTACGCACGGCATTGTTTCAATTGCATTAAATAAATAAT 112716
Score = 179 bits (198), Expect = 3e-40
Identities = 227/312 (73%), Gaps = 0/312 (0%)
Strand=Plus/Minus
Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564
|| || ||||| || | | ||| |||||||||||||| ||||| || || || || ||
Sbjct 112634 ATGTATGTATCAATCAAGATACTGTACATTTCTGAATGTATATTTTCAATAGCAATTTGG 112575
Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAG 16624
|| ||||| |||||||||||||| | | ||| ||||| | ||| | ||| ||||
Sbjct 112574 AAGCCATAGAAGCATCTAGCTTCAGTAACTTGCACTTCCTGGCTAAATCGTTCAACTAAA 112515
Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttt 16684
||||| ||||| || |||||| ||||||||||| ||||| | |||| ||||||
Sbjct 112514 TTTTCATTAACAATACCATCGGATGCTGCAAAAAATGCAAGAACGTGTGAGATAAAAAAC 112455
Query 16685 ttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCT 16744
|||| | ||| ||||| ||| || || || | ||||| | || ||||||
Sbjct 112454 CTTTCTTGATCGTTCAGTTTCTGCCAATCCTGTAAGTCATGCGATAAGTTTACTTCTTCT 112395
Query 16745 ACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATA 16804
|| ||||| || || || |||||||||||||||||| ||||||||||| || |||
Sbjct 112394 ACTGTCCAGAACGATGCTTCAGCCTTTTTATACATTTGCCATATGTCTTGATATTGAATT 112335
Query 16805 GGAAACACAACA 16816
||||| | ||||
Sbjct 112334 GGAAATATAACA 112323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462501986615200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |