Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1361 251 7e-62 >seq1361 Length=478162 Score = 251 bits (278), Expect = 7e-62 Identities = 387/550 (70%), Gaps = 4/550 (1%) Strand=Plus/Minus Query 13903 AACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAG 13962 ||||||| | || |||||||| |||| | ||||||||||| || ||||| ||||| | Sbjct 113266 AACGCCCGTCTTCGCATATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCTTCTAA 113207 Query 13963 TGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAG 14022 |||||| | ||||||||| |||||||||||| || || | | ||| ||| ||| | Sbjct 113206 TGATATTTGTTCCATAAATGGAAATGGATTTGTCGAATTATATATTTTCTCAATACCCAA 113147 Query 14023 TTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCAT 14082 ||| || || | ||| || | || || || ||||| |||||||||| ||||||||| Sbjct 113146 TTCACCAAGCAAACGATCTGCTACAAATTCTATGTATTGTGACATTAAATTACAATTCAT 113087 Query 14083 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 14142 ||||| | | |||||| | | | ||||||||||||| |||||| || || || Sbjct 113086 ACCTAACAAATCTACAGGTAGTGACTCTGTTAAAAATTCTTGTTCTATTTTAACGGCGTC 113027 Query 14143 GTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 14202 || || || | || || | || | | | ||| || || ||||| Sbjct 113026 TCGGATTATTTCTACAACACAGTCCTTTGTTGGTTTTTGTACCAAATGCTTGAACATTAA 112967 Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| ||||| |||||||| | || ||||| | ||| | |||||||||||| || | Sbjct 112966 ACAAGCAAAGTCACAATGTAAACCTTCATCGCGTGAAATTAATTCGTTTGAAAAGGTCAG 112907 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA--TGATCCGGAAAAG 14320 ||| ||||| || || ||||| |||| ||||||||||| || || || | ||||| Sbjct 112906 TCCCGGCATTAAGCCACGTTTCTTTAGCCAAAATATTGATGCAAAACTGCCACTGAAAA- 112848 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 |||| || ||||| || ||||| || |||| ||||| || || | |||| |||| | Sbjct 112847 -ATATACCTTCAACAGCCGCAAATGCAATTATACGTTCACCGAATGTTGCTGTTTTACTT 112789 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 |||||||| || ||||| || | || || || | | |||||||||||| ||| Sbjct 112788 GATATCCAATTCAACGCCCAGTCTGCCTTCTTCTTTACGCACGGCATTGTTTCAATTGCA 112729 Query 14441 TTAAATAAAT 14450 |||||||||| Sbjct 112728 TTAAATAAAT 112719 Score = 165 bits (182), Expect = 8e-36 Identities = 225/314 (72%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 |||||||||||||| | | || |||||||| || ||||| ||||| ||||| || || Sbjct 112634 ATGTATGTATCAATCAAGATACTGTACATTTCTGAATGTATATTTTCAATAGCAATTTGG 112575 Query 14534 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAA 14593 || ||||| || ||||||||||| | ||| || || | ||||| ||| | ||| Sbjct 112574 AAGCCATAGAAGCATCTAGCTTCAGTAACTTGCACTTCCTGGCTAAATCGTTCAACTAAA 112515 Query 14594 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14653 ||||||||||| |||||||| |||||||||||||| | | || | ||||| | Sbjct 112514 TTTTCATTAACAATACCATCGGATGCTGCAAAAAATGCAAGAACGTGTGAGATAAAAAAC 112455 Query 14654 TGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCA 14713 |||| || | | ||||| | |||||| ||| || | || | | |||||| || Sbjct 112454 CTTTCTTGATCGTTCAGTTTCTGCCAATCCTGTAAGTCATGCGATAAGTTTACTTCTTCT 112395 Query 14714 ACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATA 14773 |||||||| || || |||| |||||||||||| |||||| |||| |||| || Sbjct 112394 ACTGTCCAGAACGATGCTTCAGCCTTTTTATACATTTGCCATATGTCTTGATATTGAATT 112335 Query 14774 GGAAAAACTACAAA 14787 ||||| | ||||| Sbjct 112334 GGAAATATAACAAA 112321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482335157217760