Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq1361 251 7e-62
>seq1361
Length=478162
Score = 251 bits (278), Expect = 7e-62
Identities = 387/550 (70%), Gaps = 4/550 (1%)
Strand=Plus/Minus
Query 13903 AACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAG 13962
||||||| | || |||||||| |||| | ||||||||||| || ||||| ||||| |
Sbjct 113266 AACGCCCGTCTTCGCATATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCTTCTAA 113207
Query 13963 TGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAG 14022
|||||| | ||||||||| |||||||||||| || || | | ||| ||| ||| |
Sbjct 113206 TGATATTTGTTCCATAAATGGAAATGGATTTGTCGAATTATATATTTTCTCAATACCCAA 113147
Query 14023 TTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCAT 14082
||| || || | ||| || | || || || ||||| |||||||||| |||||||||
Sbjct 113146 TTCACCAAGCAAACGATCTGCTACAAATTCTATGTATTGTGACATTAAATTACAATTCAT 113087
Query 14083 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 14142
||||| | | |||||| | | | ||||||||||||| |||||| || || ||
Sbjct 113086 ACCTAACAAATCTACAGGTAGTGACTCTGTTAAAAATTCTTGTTCTATTTTAACGGCGTC 113027
Query 14143 GTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 14202
|| || || | || || | || | | | ||| || || |||||
Sbjct 113026 TCGGATTATTTCTACAACACAGTCCTTTGTTGGTTTTTGTACCAAATGCTTGAACATTAA 112967
Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262
||| ||||| |||||||| | || ||||| | ||| | |||||||||||| || |
Sbjct 112966 ACAAGCAAAGTCACAATGTAAACCTTCATCGCGTGAAATTAATTCGTTTGAAAAGGTCAG 112907
Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA--TGATCCGGAAAAG 14320
||| ||||| || || ||||| |||| ||||||||||| || || || | |||||
Sbjct 112906 TCCCGGCATTAAGCCACGTTTCTTTAGCCAAAATATTGATGCAAAACTGCCACTGAAAA- 112848
Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380
|||| || ||||| || ||||| || |||| ||||| || || | |||| |||| |
Sbjct 112847 -ATATACCTTCAACAGCCGCAAATGCAATTATACGTTCACCGAATGTTGCTGTTTTACTT 112789
Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440
|||||||| || ||||| || | || || || | | |||||||||||| |||
Sbjct 112788 GATATCCAATTCAACGCCCAGTCTGCCTTCTTCTTTACGCACGGCATTGTTTCAATTGCA 112729
Query 14441 TTAAATAAAT 14450
||||||||||
Sbjct 112728 TTAAATAAAT 112719
Score = 165 bits (182), Expect = 8e-36
Identities = 225/314 (72%), Gaps = 0/314 (0%)
Strand=Plus/Minus
Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533
|||||||||||||| | | || |||||||| || ||||| ||||| ||||| || ||
Sbjct 112634 ATGTATGTATCAATCAAGATACTGTACATTTCTGAATGTATATTTTCAATAGCAATTTGG 112575
Query 14534 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAA 14593
|| ||||| || ||||||||||| | ||| || || | ||||| ||| | |||
Sbjct 112574 AAGCCATAGAAGCATCTAGCTTCAGTAACTTGCACTTCCTGGCTAAATCGTTCAACTAAA 112515
Query 14594 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14653
||||||||||| |||||||| |||||||||||||| | | || | ||||| |
Sbjct 112514 TTTTCATTAACAATACCATCGGATGCTGCAAAAAATGCAAGAACGTGTGAGATAAAAAAC 112455
Query 14654 TGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCA 14713
|||| || | | ||||| | |||||| ||| || | || | | |||||| ||
Sbjct 112454 CTTTCTTGATCGTTCAGTTTCTGCCAATCCTGTAAGTCATGCGATAAGTTTACTTCTTCT 112395
Query 14714 ACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATA 14773
|||||||| || || |||| |||||||||||| |||||| |||| |||| ||
Sbjct 112394 ACTGTCCAGAACGATGCTTCAGCCTTTTTATACATTTGCCATATGTCTTGATATTGAATT 112335
Query 14774 GGAAAAACTACAAA 14787
||||| | |||||
Sbjct 112334 GGAAATATAACAAA 112321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482335157217760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |