Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1361 136 8e-27 seq1606 100 6e-16 seq204 84.2 4e-11 >seq1361 Length=478162 Score = 136 bits (150), Expect = 8e-27 Identities = 328/493 (67%), Gaps = 10/493 (2%) Strand=Plus/Plus Query 101855 AAGAAGAAGGAGCAGTGGGCTATTAATTGGAT-----GCAAAGCAATAACGATTTGGCGG 101909 |||||||||| | ||||| | |||||||| | ||| || ||| ||| || | Sbjct 112754 AAGAAGAAGGCAGACTGGGCGTTGAATTGGATATCAAGTAAAACAGCAAC-ATTCGGTG- 112811 Query 101910 AACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCA 101969 ||| || |||| ||||| || |||||||| || || || ||||| || ||||| | Sbjct 112812 AACGTATAATTGCATTTGCGGCTGTTGAAGGTATATTTTTCAGTGGCAGTTTTGCATCAA 112871 Query 101970 TTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTT 102029 | || ||| | ||||| | || | |||| || || |||| || || || || |||| Sbjct 112872 TATTTTGGCTAAAGAAACGTGGCTTAATGCCGGGACTGACCTTTTCAAACGAATTAATTT 112931 Query 102030 CTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTG 102089 | | || |||||| | ||| | |||||||| || | |||| || | ||| || Sbjct 112932 CACGCGATGAAGGTTTACATTGTGACTTTGCTTGTTTAATGTTCAAGCA---TTTGGTAC 112988 Query 102090 ATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAG 102149 | | ||| ||| || | || | ||||| || || ||||| ||| ||||||| Sbjct 112989 AAAAACCAACAAAGGACTGTGTTGTAGAAATAATCCGAGACGCCGTTAAAATAGAACAAG 113048 Query 102150 AATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCC 102209 ||||| | |||| || || ||||| | || | || ||||| || || || ||| | Sbjct 113049 AATTTTTAACAGAGTCACTACCTGTAGATTTGTTAGGTATGAATTGTAATTTAATGTCAC 113108 Query 102210 AGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATA 102269 | ||||| |||||||| |||||| | | | |||| |||| | || || |||| Sbjct 113109 AATACATAGAATTTGTAGCAGATCGTTTGCTTGGTGAATTGGGTATTGAGAAAATATATA 113168 Query 102270 ATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTT 102329 || || || || || ||||| ||||| | || || | || || || || || | Sbjct 113169 ATTCGACAAATCCATTTCCATTTATGGAACAAATATCATTAGAAGGCAAAACGAATTTCT 113228 Query 102330 TTGAAAAGAGAGT 102342 ||||||||| ||| Sbjct 113229 TTGAAAAGAAAGT 113241 >seq1606 Length=54755 Score = 100 bits (110), Expect = 6e-16 Identities = 173/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 35396 GGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACC 35455 || |||||||| ||||| ||||| || |||||| | |||||||| || || ||| ||| Sbjct 17238 GGTGATTTGGGTCCCGTTTACGGTTTTCAATGGAGACATTTTGGCGCCGACTATAATAAT 17179 Query 35456 TGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTG 35515 ||| | | ||||| | || | || |||||||| | ||| | | |||| | | Sbjct 17178 TGTCATACTGATTACTCAGGTCATGGGGTTGATCAACTAGCCGAAGTGATAAAAAAGATT 17119 Query 35516 AGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCAC 35575 | |||||||||| |||| | | || || ||| | ||||||||||| || | | | Sbjct 17118 AAAGAAAATCCAACTGATCGTCGTATTATCATGTCTGCATGGAATCCAATACAAATACCA 17059 Query 35576 CTTATGGCTCTTCCTCCATGCCACATGAC-TGCTCAATTTTATGTGGCTAATGGAGAATT 35634 | ||||| | || || ||||| || | || ||||| | ||| ||||| || ||||| Sbjct 17058 CAAATGGCATTGCCGCCTTGCCA-TTGTCTTGTACAATTCTTTGTAGCTAACGGTGAATT 17000 Query 35635 GTCGTGCCA 35643 ||||| || Sbjct 16999 ATCGTGTCA 16991 >seq204 Length=47217 Score = 84.2 bits (92), Expect = 4e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 94902 TGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATC 94961 ||||||| | ||||| || || | ||||| |||||||| || |||||| |||| Sbjct 16372 TGTTCCAGCAGCAAACATAGTCGGTGTGGCATGTGTAAAATATCGCTGCGACATAAGATT 16431 Query 94962 ATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAAT 95021 ||| ||||||||| || | || ||| || |||||||||||||| |||||||| | Sbjct 16432 ATACGTTTCAATGGCATCATCAATATCTTCACCATGAATGCCGACAGCAACACGCATCAA 16491 Query 95022 CATGTCCTGAGGGCGCTCA 95040 || || ||||| | |||| Sbjct 16492 CAAGTGTTGAGGCCTCTCA 16510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989562039894060