Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1524 118 1e-21 seq1282 113 4e-20 >seq1524 Length=218836 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| |||||||||| |||||||| || || ||||| |||||| | Sbjct 78 CCACCACGAAGACGCAATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAC 137 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | ||||| || || |||||||| | |||| ||| |||||||| ||||| Sbjct 138 AATGTACGTCCA-TCTTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGG 196 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | ||| | || || | || || || Sbjct 197 AATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCTAC 256 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || ||||| ||||| || |||||||||||| Sbjct 257 TTCTAAAGTAATGGTTTTACCAGTCAAAGTTTTGACAAATATTTGCATA 305 >seq1282 Length=29674 Score = 113 bits (124), Expect = 4e-20 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593 || |||||||| ||||| | || || || | ||||| || || || || |||||||| Sbjct 28561 ATAGCCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATC 28620 Query 139594 GCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGG 139652 | ||||| || | || || || |||||||||||| | || | |||||| ||||| | Sbjct 28621 CGATAATGTGCGTCCA-TCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTG 28679 Query 139653 GAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCT 139712 |||| |||||||| ||||| ||| || ||| | | ||| | || || | |||| Sbjct 28680 GAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCT 28739 Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 | || || | || | ||||| || ||||| ||||| ||||| || |||||| || Sbjct 28740 CGACTTCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCATACCT 28795 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| ||||| || | |||||||| ||||| ||||| || || | Sbjct 29021 CCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 29080 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | ||||| || || || |||||| |||| | |||||||||||| || || Sbjct 29081 AATGTACGTCCA-TCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGG 29139 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | ||| | || || | || || || Sbjct 29140 AATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAAC 29199 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || ||||| ||||| ||||| ||||||||| Sbjct 29200 TTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29248 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| ||||| || | |||||||| ||||| ||||| || || | Sbjct 29249 CCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 29308 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | ||||| || || || |||||| |||| | |||||||||||| || || Sbjct 29309 AATGTACGTCCA-TCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGG 29367 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | ||| | || || | || || || Sbjct 29368 AATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAAC 29427 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || ||||| ||||| ||||| ||||||||| Sbjct 29428 TTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29476 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| || ||||| || | || || |||||||| ||||| || || Sbjct 28793 CCTCCACGTAGACGTAATACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGAT 28852 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| || |||||||||||| | |||| |||||||||||| || || Sbjct 28853 AATGTACGACCATCTTCAAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGA 28912 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | ||| | || || | || || || Sbjct 28913 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCTACT 28972 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || ||||| ||||| ||||| ||||||||| Sbjct 28973 TCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496053260214400