Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1361 273 2e-68 >seq1361 Length=478162 Score = 273 bits (302), Expect = 2e-68 Identities = 394/554 (71%), Gaps = 4/554 (1%) Strand=Plus/Minus Query 13571 AACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAG 13630 ||||||| | || |||||||| |||| | ||||||||||| || ||||| ||||| | Sbjct 113266 AACGCCCGTCTTCGCATATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCTTCTAA 113207 Query 13631 TGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAG 13690 |||||| | ||||||||| |||||||||| | || || | | ||| ||| ||| | Sbjct 113206 TGATATTTGTTCCATAAATGGAAATGGATTTGTCGAATTATATATTTTCTCAATACCCAA 113147 Query 13691 TTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13750 ||| || || | ||| || | ||| || || ||||| |||||||||| ||||||||| Sbjct 113146 TTCACCAAGCAAACGATCTGCTACAAATTCTATGTATTGTGACATTAAATTACAATTCAT 113087 Query 13751 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13810 ||||| | | |||||| | | | ||||||||||||| |||||| || || || Sbjct 113086 ACCTAACAAATCTACAGGTAGTGACTCTGTTAAAAATTCTTGTTCTATTTTAACGGCGTC 113027 Query 13811 TTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 13870 | || || | || | || || | || | | | ||| || || ||||| Sbjct 113026 TCGGATTATTTCTACAACACAGTCCTTTGTTGGTTTTTGTACCAAATGCTTGAACATTAA 112967 Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||| |||||||| | || ||||| | ||| | |||||||||||| || | Sbjct 112966 ACAAGCAAAGTCACAATGTAAACCTTCATCGCGTGAAATTAATTCGTTTGAAAAGGTCAG 112907 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA--TGACCCGGAAAAG 13988 ||| ||||| || || ||||| |||| ||||||||||| ||||| || | | ||||| Sbjct 112906 TCCCGGCATTAAGCCACGTTTCTTTAGCCAAAATATTGATGCAAAACTGCCACTGAAAA- 112848 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 |||| || ||||| || ||||| || |||| ||||| || || | |||| |||| | Sbjct 112847 -ATATACCTTCAACAGCCGCAAATGCAATTATACGTTCACCGAATGTTGCTGTTTTACTT 112789 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 |||||||| || ||||| || | || || || | | |||||||||||| ||| Sbjct 112788 GATATCCAATTCAACGCCCAGTCTGCCTTCTTCTTTACGCACGGCATTGTTTCAATTGCA 112729 Query 14109 TTAAATAAATATTC 14122 ||||||||||| || Sbjct 112728 TTAAATAAATAATC 112715 Score = 183 bits (202), Expect = 3e-41 Identities = 229/314 (73%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 |||||||||||||| | | || |||||||| || ||||| ||||| ||||| || || Sbjct 112634 ATGTATGTATCAATCAAGATACTGTACATTTCTGAATGTATATTTTCAATAGCAATTTGG 112575 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAA 14261 || ||||| |||||||||||||| | ||| |||||| | ||||| ||| | ||| Sbjct 112574 AAGCCATAGAAGCATCTAGCTTCAGTAACTTGCACTTCCTGGCTAAATCGTTCAACTAAA 112515 Query 14262 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14321 ||||||||||| |||||||| |||||||||||||| | | || | ||||| | Sbjct 112514 TTTTCATTAACAATACCATCGGATGCTGCAAAAAATGCAAGAACGTGTGAGATAAAAAAC 112455 Query 14322 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCA 14381 |||| || ||| ||||| | |||||| ||| || | || | | |||||| || Sbjct 112454 CTTTCTTGATCGTTCAGTTTCTGCCAATCCTGTAAGTCATGCGATAAGTTTACTTCTTCT 112395 Query 14382 ACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATA 14441 |||||||| || || |||| |||||||||||| |||||| |||| |||| || Sbjct 112394 ACTGTCCAGAACGATGCTTCAGCCTTTTTATACATTTGCCATATGTCTTGATATTGAATT 112335 Query 14442 GGAAAAACTACAAA 14455 ||||| | ||||| Sbjct 112334 GGAAATATAACAAA 112321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479717613888800