Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1361 251 7e-62 >seq1361 Length=478162 Score = 251 bits (278), Expect = 7e-62 Identities = 389/551 (71%), Gaps = 6/551 (1%) Strand=Plus/Minus Query 13359 AACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAG 13418 ||||||| | || |||||||| |||| | |||||||| || || ||||| ||||| | Sbjct 113266 AACGCCCGTCTTCGCATATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCTTCTAA 113207 Query 13419 TGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAG 13478 |||||| | ||||||||| ||||||||||| || || | | ||| ||| ||| | Sbjct 113206 TGATATTTGTTCCATAAATGGAAATGGATTTGTCGAATTATATATTTTCTCAATACCCAA 113147 Query 13479 TTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13538 ||| | || | ||| || | ||| || || ||||| |||||||||| ||||||||| Sbjct 113146 TTCACCAAGCAAACGATCTGCTACAAATTCTATGTATTGTGACATTAAATTACAATTCAT 113087 Query 13539 ACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13598 ||||| | | |||||| | | | ||||||||||||| |||||| || || || Sbjct 113086 ACCTAACAAATCTACAGGTAGTGACTCTGTTAAAAATTCTTGTTCTATTTTAACGGCGTC 113027 Query 13599 GTTTATAATAATCTT-AATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTA 13657 || || ||| || | ||| || | || | | | ||| || || |||| Sbjct 113026 TCGGATTATT-TCTACAACACAGTCCTTTGTTGGTTTTTGTACCAAATGCTTGAACATTA 112968 Query 13658 AACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTA 13717 |||| ||||| |||||||| | || ||||| | ||| | |||||||||||| || | Sbjct 112967 AACAAGCAAAGTCACAATGTAAACCTTCATCGCGTGAAATTAATTCGTTTGAAAAGGTCA 112908 Query 13718 ATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA--TGATCCGGAAAA 13775 ||| ||||| || || ||||| |||| ||||||||||| || || || | |||| Sbjct 112907 GTCCCGGCATTAAGCCACGTTTCTTTAGCCAAAATATTGATGCAAAACTGCCACTGAAA- 112849 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 ||||| || ||||| || ||||| || |||| ||||| || || | |||| |||| | Sbjct 112848 -AATATACCTTCAACAGCCGCAAATGCAATTATACGTTCACCGAATGTTGCTGTTTTACT 112790 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 ||||||||| || ||||| || | || || || | | ||||||||| ||||| Sbjct 112789 TGATATCCAATTCAACGCCCAGTCTGCCTTCTTCTTTACGCACGGCATTGTTTCAATTGC 112730 Query 13896 ATTGAATAAAT 13906 ||| ||||||| Sbjct 112729 ATTAAATAAAT 112719 Score = 174 bits (192), Expect = 2e-38 Identities = 227/314 (72%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 |||||||||||||| | | || |||||||| || ||||| ||||| ||||| || || Sbjct 112634 ATGTATGTATCAATCAAGATACTGTACATTTCTGAATGTATATTTTCAATAGCAATTTGG 112575 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAG 14049 || ||||| || ||||||||||| | ||| || ||| | ||||| ||| | || Sbjct 112574 AAGCCATAGAAGCATCTAGCTTCAGTAACTTGCACTTCCTGGCTAAATCGTTCAACTAAA 112515 Query 14050 TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14109 |||||||||||||||||||| |||||||||||||| | | || | ||||| | Sbjct 112514 TTTTCATTAACAATACCATCGGATGCTGCAAAAAATGCAAGAACGTGTGAGATAAAAAAC 112455 Query 14110 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCA 14169 |||| || ||| ||||| | |||||| ||| || | || | | |||||| || Sbjct 112454 CTTTCTTGATCGTTCAGTTTCTGCCAATCCTGTAAGTCATGCGATAAGTTTACTTCTTCT 112395 Query 14170 ACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATA 14229 |||||||| || || |||| |||||||||||| |||||| |||| |||| || Sbjct 112394 ACTGTCCAGAACGATGCTTCAGCCTTTTTATACATTTGCCATATGTCTTGATATTGAATT 112335 Query 14230 GGAAAAACTACAAA 14243 ||||| | ||||| Sbjct 112334 GGAAATATAACAAA 112321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478578438552480