Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq1361 251 7e-62
>seq1361
Length=478162
Score = 251 bits (278), Expect = 7e-62
Identities = 389/551 (71%), Gaps = 6/551 (1%)
Strand=Plus/Minus
Query 13359 AACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAG 13418
||||||| | || |||||||| |||| | |||||||| || || ||||| ||||| |
Sbjct 113266 AACGCCCGTCTTCGCATATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCTTCTAA 113207
Query 13419 TGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAG 13478
|||||| | ||||||||| ||||||||||| || || | | ||| ||| ||| |
Sbjct 113206 TGATATTTGTTCCATAAATGGAAATGGATTTGTCGAATTATATATTTTCTCAATACCCAA 113147
Query 13479 TTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13538
||| | || | ||| || | ||| || || ||||| |||||||||| |||||||||
Sbjct 113146 TTCACCAAGCAAACGATCTGCTACAAATTCTATGTATTGTGACATTAAATTACAATTCAT 113087
Query 13539 ACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13598
||||| | | |||||| | | | ||||||||||||| |||||| || || ||
Sbjct 113086 ACCTAACAAATCTACAGGTAGTGACTCTGTTAAAAATTCTTGTTCTATTTTAACGGCGTC 113027
Query 13599 GTTTATAATAATCTT-AATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTA 13657
|| || ||| || | ||| || | || | | | ||| || || ||||
Sbjct 113026 TCGGATTATT-TCTACAACACAGTCCTTTGTTGGTTTTTGTACCAAATGCTTGAACATTA 112968
Query 13658 AACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTA 13717
|||| ||||| |||||||| | || ||||| | ||| | |||||||||||| || |
Sbjct 112967 AACAAGCAAAGTCACAATGTAAACCTTCATCGCGTGAAATTAATTCGTTTGAAAAGGTCA 112908
Query 13718 ATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA--TGATCCGGAAAA 13775
||| ||||| || || ||||| |||| ||||||||||| || || || | ||||
Sbjct 112907 GTCCCGGCATTAAGCCACGTTTCTTTAGCCAAAATATTGATGCAAAACTGCCACTGAAA- 112849
Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835
||||| || ||||| || ||||| || |||| ||||| || || | |||| |||| |
Sbjct 112848 -AATATACCTTCAACAGCCGCAAATGCAATTATACGTTCACCGAATGTTGCTGTTTTACT 112790
Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895
||||||||| || ||||| || | || || || | | ||||||||| |||||
Sbjct 112789 TGATATCCAATTCAACGCCCAGTCTGCCTTCTTCTTTACGCACGGCATTGTTTCAATTGC 112730
Query 13896 ATTGAATAAAT 13906
||| |||||||
Sbjct 112729 ATTAAATAAAT 112719
Score = 174 bits (192), Expect = 2e-38
Identities = 227/314 (72%), Gaps = 0/314 (0%)
Strand=Plus/Minus
Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989
|||||||||||||| | | || |||||||| || ||||| ||||| ||||| || ||
Sbjct 112634 ATGTATGTATCAATCAAGATACTGTACATTTCTGAATGTATATTTTCAATAGCAATTTGG 112575
Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAG 14049
|| ||||| || ||||||||||| | ||| || ||| | ||||| ||| | ||
Sbjct 112574 AAGCCATAGAAGCATCTAGCTTCAGTAACTTGCACTTCCTGGCTAAATCGTTCAACTAAA 112515
Query 14050 TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14109
|||||||||||||||||||| |||||||||||||| | | || | ||||| |
Sbjct 112514 TTTTCATTAACAATACCATCGGATGCTGCAAAAAATGCAAGAACGTGTGAGATAAAAAAC 112455
Query 14110 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCA 14169
|||| || ||| ||||| | |||||| ||| || | || | | |||||| ||
Sbjct 112454 CTTTCTTGATCGTTCAGTTTCTGCCAATCCTGTAAGTCATGCGATAAGTTTACTTCTTCT 112395
Query 14170 ACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATA 14229
|||||||| || || |||| |||||||||||| |||||| |||| |||| ||
Sbjct 112394 ACTGTCCAGAACGATGCTTCAGCCTTTTTATACATTTGCCATATGTCTTGATATTGAATT 112335
Query 14230 GGAAAAACTACAAA 14243
||||| | |||||
Sbjct 112334 GGAAATATAACAAA 112321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478578438552480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |