Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq1282 136 4e-27
seq1524 131 2e-25
seq1651 114 1e-20
seq314 100 3e-16
seq981 95.1 1e-14
seq429 84.2 2e-11
>seq1282
Length=29674
Score = 136 bits (150), Expect = 4e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||| |||| ||| || |||||||| | || ||||||||||| |||||||| ||
Sbjct 28793 CCTCCACGTAGACGTAATACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGAT 28852
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||| | ||||| ||||||||||||||| | |||| |||||||||||| || ||
Sbjct 28853 AATGTACGACCATCTTCAAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGA 28912
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| ||||| || || || | | ||| | || || | |||||||||
Sbjct 28913 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCTACT 28972
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | ||| | || || || ||||| ||||| ||||| |||||||||
Sbjct 28973 TCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29020
Score = 122 bits (134), Expect = 9e-23
Identities = 170/236 (72%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 142954 ATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC 143013
|| ||| |||| ||||| | || ||||| | ||||||||| || || || || |||||
Sbjct 28561 ATAGCCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATC 28620
Query 143014 GCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGG 143072
| ||||| || | || || ||||||||||||||| | || | |||||| ||||| |
Sbjct 28621 CGATAATGTGCGTCCA-TCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTG 28679
Query 143073 GAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTT 143132
|||| |||||||| ||||| || || ||| | | ||| | || || | || |
Sbjct 28680 GAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCT 28739
Query 143133 CTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188
| ||||| | ||| | ||||| || ||||| ||||| ||||| || |||||| ||
Sbjct 28740 CGACTTCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCATACCT 28795
Score = 122 bits (134), Expect = 9e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | |||||| |||||||| | ||||| || ||||| |||||||| || |
Sbjct 29021 CCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 29080
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| ||| | || | ||||| ||||| || |||||| |||| | |||||||||||| || ||
Sbjct 29081 AATGTACGTCCA-TCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGG 29139
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||| ||||| || || || | | ||| | || || | ||||| ||
Sbjct 29140 AATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAAC 29199
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
||| | ||| | || || || ||||| ||||| ||||| |||||||||
Sbjct 29200 TTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29248
Score = 122 bits (134), Expect = 9e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | |||||| |||||||| | ||||| || ||||| |||||||| || |
Sbjct 29249 CCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 29308
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| ||| | || | ||||| ||||| || |||||| |||| | |||||||||||| || ||
Sbjct 29309 AATGTACGTCCA-TCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGG 29367
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||| ||||| || || || | | ||| | || || | ||||| ||
Sbjct 29368 AATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAAC 29427
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
||| | ||| | || || || ||||| ||||| ||||| |||||||||
Sbjct 29428 TTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29476
>seq1524
Length=218836
Score = 131 bits (144), Expect = 2e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | |||||| ||||| |||| ||||| || || || |||||||||||| |
Sbjct 78 CCACCACGAAGACGCAATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAC 137
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| ||| | || | ||||| ||||| |||||||| | |||| ||| |||||||| |||||
Sbjct 138 AATGTACGTCCA-TCTTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGG 196
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||| ||||| || || || | | ||| | || || | ||||||||
Sbjct 197 AATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCTAC 256
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
||| | ||| | || || || ||||| ||||| || ||||||||||||
Sbjct 257 TTCTAAAGTAATGGTTTTACCAGTCAAAGTTTTGACAAATATTTGCATA 305
>seq1651
Length=647375
Score = 114 bits (126), Expect = 1e-20
Identities = 245/361 (68%), Gaps = 14/361 (4%)
Strand=Plus/Plus
Query 156862 CAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCAT 156921
|| ||||| || |||| ||||| ||||||| ||||| || || || ||||| |
Sbjct 382772 CAGCATAAAAA---CATCAGCCAATCCTTGAACCCCAATCCCAATTGGTCGATGTCTACG 382828
Query 156922 ATTAGAtttttttGCA---GTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAA 156978
||| ||| || ||| | ||| || ||| |||| ||| || |||||||||||
Sbjct 382829 ATTCGATCGTTCTGCTTCTGGTTCC---GGATAGTAATTAATATCGATTATTTTATTCAA 382885
Query 156979 ACT-ATCCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTATCATTAT 157037
| | || | ||| |||| ||| | | ||| | | ||| ||| |||||| | ||
Sbjct 382886 ATTTATTGTCAACAC-TTTGGCCATATGCTTCAACATATTAAAGTCATAAGTATTCTCAT 382944
Query 157038 TGATAT---ATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCG 157094
| ||||||| | ||||||||||||| ||||||||| ||| |||| || |
Sbjct 382945 CTACCACGAATTTATTCAATGCAATCGACGCTAAATTACATACAGCAATTTCATCTCGAT 383004
Query 157095 CGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTT 157154
| ||||||| | ||||| | ||||||||||| || || || |||| ||
Sbjct 383005 CACAATATTCCATGATTTCGGTGCACAAATTGCTACAGCGAATTGTACCCAAATTCTGTT 383064
Query 157155 GATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTT 157214
|||| ||| |||||||| || || || || ||||| ||||| || |||||||| |||
Sbjct 383065 GATTTGATTTACGGTTGCACGCATCTTTATACAACATATACGGCGTACCGGTTTCTACTT 383124
Query 157215 G 157215
|
Sbjct 383125 G 383125
>seq314
Length=315434
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029
||||| || ||||||| |||||||| ||||| |||||||| || | ||||
Sbjct 276250 CGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGATAAGGTGCGACCA 276191
Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089
||||| | ||||||||| ||| |||||| |||||| ||||| || || |||||||||||
Sbjct 276190 TCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTA 276131
Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149
|| ||| || |||| | ||| | || || | ||||| ||||| | || |
Sbjct 276130 TCTTGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTAATG 276071
Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| || || || | || || || || || |||||
Sbjct 276070 GTTTTACCCGTAAGAGTCTTCACAAAGATCTGCAT 276036
>seq981
Length=59034
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | |||||| || || |||| || || || || || || ||||| ||| |
Sbjct 46937 CCACCACGGAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCGGAC 46878
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | ||||| | ||| |||||||| |||||| |||||| ||||| || ||
Sbjct 46877 AACGTACGGCCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGGA 46818
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
||||| ||||| || ||||| ||| | | ||| | || || | ||||| ||
Sbjct 46817 ATGCCCTCTTTATCTTGGATTTTGGCTTTCACATTTTCGATTGTATCTGATGGTTCCACC 46758
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | || || || ||||||||||| ||||| || |||||
Sbjct 46757 TCTAGGGTGATGGTTTTACCAGTCAATGTTTTCACGAAGATCTGCAT 46711
>seq429
Length=166132
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 60391 GCTTCAATGTTGCCCAAATCACCGACGTGTCTCACCGCAGCGTTGGGCGCACCATGATTG 60450
|||| |||||| |||||||||||| | || | || || || | || || ||||| |
Sbjct 144601 GCTTGAATGTTTCCCAAATCACCGGCATGACGTACTGCGGCATCTGGAGCCCCATGGTCC 144542
Query 60451 CTACCCGTCGGATTAAAATGTTCTCCGGCCGAAGTACAGCCGTTGCTGATGTCGCCAAAT 60510
|||| ||||||||||| ||| ||||| || |||||||| || |||| || |||
Sbjct 144541 TTACCATGTGGATTAAAATGGGGTCCAGCCGAGGTGCAGCCGTTTGTGTTGTCTCCGAAT 144482
Query 60511 TCGTGTACGTGAAAACCGTGCAGTCCTTT 60539
|| || | ||| || || || || |||||
Sbjct 144481 TCATGAATGTGGAATCCATGGAGACCTTT 144453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507003423138240
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