Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1282 136 4e-27 seq1524 131 2e-25 seq1651 114 1e-20 seq314 100 3e-16 seq981 95.1 1e-14 seq429 84.2 2e-11 >seq1282 Length=29674 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| |||| ||| || |||||||| | || ||||||||||| |||||||| || Sbjct 28793 CCTCCACGTAGACGTAATACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGAT 28852 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| ||||||||||||||| | |||| |||||||||||| || || Sbjct 28853 AATGTACGACCATCTTCAAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGA 28912 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | ||| | || || | ||||||||| Sbjct 28913 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCTACT 28972 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || ||||| ||||| ||||| ||||||||| Sbjct 28973 TCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29020 Score = 122 bits (134), Expect = 9e-23 Identities = 170/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 142954 ATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC 143013 || ||| |||| ||||| | || ||||| | ||||||||| || || || || ||||| Sbjct 28561 ATAGCCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATC 28620 Query 143014 GCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGG 143072 | ||||| || | || || ||||||||||||||| | || | |||||| ||||| | Sbjct 28621 CGATAATGTGCGTCCA-TCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTG 28679 Query 143073 GAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTT 143132 |||| |||||||| ||||| || || ||| | | ||| | || || | || | Sbjct 28680 GAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCT 28739 Query 143133 CTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 | ||||| | ||| | ||||| || ||||| ||||| ||||| || |||||| || Sbjct 28740 CGACTTCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCATACCT 28795 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| |||||||| | ||||| || ||||| |||||||| || | Sbjct 29021 CCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 29080 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | ||||| ||||| || |||||| |||| | |||||||||||| || || Sbjct 29081 AATGTACGTCCA-TCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGG 29139 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || || | | ||| | || || | ||||| || Sbjct 29140 AATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAAC 29199 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | || || || ||||| ||||| ||||| ||||||||| Sbjct 29200 TTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29248 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| |||||||| | ||||| || ||||| |||||||| || | Sbjct 29249 CCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 29308 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | ||||| ||||| || |||||| |||| | |||||||||||| || || Sbjct 29309 AATGTACGTCCA-TCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGG 29367 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || || | | ||| | || || | ||||| || Sbjct 29368 AATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAAC 29427 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | || || || ||||| ||||| ||||| ||||||||| Sbjct 29428 TTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29476 >seq1524 Length=218836 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| ||||| |||| ||||| || || || |||||||||||| | Sbjct 78 CCACCACGAAGACGCAATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAC 137 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | ||||| ||||| |||||||| | |||| ||| |||||||| ||||| Sbjct 138 AATGTACGTCCA-TCTTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGG 196 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || || | | ||| | || || | |||||||| Sbjct 197 AATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCTAC 256 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | || || || ||||| ||||| || |||||||||||| Sbjct 257 TTCTAAAGTAATGGTTTTACCAGTCAAAGTTTTGACAAATATTTGCATA 305 >seq1651 Length=647375 Score = 114 bits (126), Expect = 1e-20 Identities = 245/361 (68%), Gaps = 14/361 (4%) Strand=Plus/Plus Query 156862 CAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCAT 156921 || ||||| || |||| ||||| ||||||| ||||| || || || ||||| | Sbjct 382772 CAGCATAAAAA---CATCAGCCAATCCTTGAACCCCAATCCCAATTGGTCGATGTCTACG 382828 Query 156922 ATTAGAtttttttGCA---GTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAA 156978 ||| ||| || ||| | ||| || ||| |||| ||| || ||||||||||| Sbjct 382829 ATTCGATCGTTCTGCTTCTGGTTCC---GGATAGTAATTAATATCGATTATTTTATTCAA 382885 Query 156979 ACT-ATCCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTATCATTAT 157037 | | || | ||| |||| ||| | | ||| | | ||| ||| |||||| | || Sbjct 382886 ATTTATTGTCAACAC-TTTGGCCATATGCTTCAACATATTAAAGTCATAAGTATTCTCAT 382944 Query 157038 TGATAT---ATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCG 157094 | ||||||| | ||||||||||||| ||||||||| ||| |||| || | Sbjct 382945 CTACCACGAATTTATTCAATGCAATCGACGCTAAATTACATACAGCAATTTCATCTCGAT 383004 Query 157095 CGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTT 157154 | ||||||| | ||||| | ||||||||||| || || || |||| || Sbjct 383005 CACAATATTCCATGATTTCGGTGCACAAATTGCTACAGCGAATTGTACCCAAATTCTGTT 383064 Query 157155 GATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTT 157214 |||| ||| |||||||| || || || || ||||| ||||| || |||||||| ||| Sbjct 383065 GATTTGATTTACGGTTGCACGCATCTTTATACAACATATACGGCGTACCGGTTTCTACTT 383124 Query 157215 G 157215 | Sbjct 383125 G 383125 >seq314 Length=315434 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 ||||| || ||||||| |||||||| ||||| |||||||| || | |||| Sbjct 276250 CGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGATAAGGTGCGACCA 276191 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| | ||||||||| ||| |||||| |||||| ||||| || || ||||||||||| Sbjct 276190 TCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTA 276131 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || |||| | ||| | || || | ||||| ||||| | || | Sbjct 276130 TCTTGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTAATG 276071 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || || | || || || || || ||||| Sbjct 276070 GTTTTACCCGTAAGAGTCTTCACAAAGATCTGCAT 276036 >seq981 Length=59034 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| || || || || || || ||||| ||| | Sbjct 46937 CCACCACGGAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCGGAC 46878 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | ||| |||||||| |||||| |||||| ||||| || || Sbjct 46877 AACGTACGGCCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGGA 46818 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| ||||| || ||||| ||| | | ||| | || || | ||||| || Sbjct 46817 ATGCCCTCTTTATCTTGGATTTTGGCTTTCACATTTTCGATTGTATCTGATGGTTCCACC 46758 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || ||||||||||| ||||| || ||||| Sbjct 46757 TCTAGGGTGATGGTTTTACCAGTCAATGTTTTCACGAAGATCTGCAT 46711 >seq429 Length=166132 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 60391 GCTTCAATGTTGCCCAAATCACCGACGTGTCTCACCGCAGCGTTGGGCGCACCATGATTG 60450 |||| |||||| |||||||||||| | || | || || || | || || ||||| | Sbjct 144601 GCTTGAATGTTTCCCAAATCACCGGCATGACGTACTGCGGCATCTGGAGCCCCATGGTCC 144542 Query 60451 CTACCCGTCGGATTAAAATGTTCTCCGGCCGAAGTACAGCCGTTGCTGATGTCGCCAAAT 60510 |||| ||||||||||| ||| ||||| || |||||||| || |||| || ||| Sbjct 144541 TTACCATGTGGATTAAAATGGGGTCCAGCCGAGGTGCAGCCGTTTGTGTTGTCTCCGAAT 144482 Query 60511 TCGTGTACGTGAAAACCGTGCAGTCCTTT 60539 || || | ||| || || || || ||||| Sbjct 144481 TCATGAATGTGGAATCCATGGAGACCTTT 144453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507003423138240