Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1282 147 2e-30 seq314 140 2e-28 seq1524 134 1e-26 seq981 109 4e-19 >seq1282 Length=29674 Score = 147 bits (162), Expect = 2e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| |||||||| || || || |||||||| |||||||| || || | | | || Sbjct 28807 TAATACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGATAATGTACGACCATC 28866 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | |||||| ||||| | ||||||||||| || || |||||| ||||| ||||| Sbjct 28867 TTCAAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTGTC 28926 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || ||| ||| ||| |||| |||||||| | |||||| ||||| |||||||| Sbjct 28927 TTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGT 28986 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || |||| |||||| || |||||||||||| Sbjct 28987 TTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29020 Score = 122 bits (134), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || |||||||| || || || || ||||| |||||||| || | ||| || | | Sbjct 29036 AATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAG--ACAATGTACGTCCAT 29093 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| | ||| |||||||| | || |||||||| || || ||||| ||||| |||| Sbjct 29094 CTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTGT 29153 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | || ||| ||| || |||| |||||||| | ||| || ||||| ||||||| Sbjct 29154 CTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATGG 29213 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || |||| |||||| || |||||||||||| Sbjct 29214 TTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29248 Score = 122 bits (134), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || |||||||| || || || || ||||| |||||||| || | ||| || | | Sbjct 29264 AATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAG--ACAATGTACGTCCAT 29321 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| | ||| |||||||| | || |||||||| || || ||||| ||||| |||| Sbjct 29322 CTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTGT 29381 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | || ||| ||| || |||| |||||||| | ||| || ||||| ||||||| Sbjct 29382 CTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATGG 29441 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || |||| |||||| || |||||||||||| Sbjct 29442 TTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29476 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 ||| |||||||| | | || ||||| || || || || || || || || ||||| Sbjct 28564 GCCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATCCGA 28623 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | || || | |||||| ||||| | || ||||||||||| || || Sbjct 28624 TAATGTGCGTCCATCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGAGG 28683 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||| ||||| ||||| || ||| || || |||| |||||||| || || Sbjct 28684 AATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCTCGAC 28743 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||| ||||| |||| ||||| || || || |||||| Sbjct 28744 TTCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCATA 28792 >seq314 Length=315434 Score = 140 bits (154), Expect = 2e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||||||||| || || ||||| |||||||| || || | | | ||| Sbjct 276247 AACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGATAAGGTGCGACCATCT 276188 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| || || | |||||||||||||| || |||||| |||||||| || Sbjct 276187 TCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCT 276128 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| ||||||| |||| || |||||| ||| || || | |||||||||| Sbjct 276127 TGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTAATGGTT 276068 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| || ||||| || ||||| Sbjct 276067 TTACCCGTAAGAGTCTTCACAAAGATCTGCAT 276036 >seq1524 Length=218836 Score = 134 bits (148), Expect = 1e-26 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || ||||| ||||| || || || || || |||||||||||| | ||| || | | Sbjct 93 AATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGG--ACAATGTACGTCCAT 150 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| | ||| || |||||| | |||||||| || || || ||||| ||||| |||| Sbjct 151 CTTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGT 210 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | || ||| ||| || |||| |||||||| | |||||| ||||| ||||||| Sbjct 211 CTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGG 270 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||||| |||| |||||| ||||| ||||||||| Sbjct 271 TTTTACCAGTCAAAGTTTTGACAAATATTTGCATA 305 >seq981 Length=59034 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || |||||||| || || || || || ||||| ||| | | | | ||| Sbjct 46922 AACACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCGGACAACGTACGGCCATCT 46863 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || |||||| | |||||||||||||| || |||||| || ||||| || Sbjct 46862 TCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCTTTATCT 46803 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| || ||| |||| || ||||| ||| || |||| ||| |||||| Sbjct 46802 TGGATTTTGGCTTTCACATTTTCGATTGTATCTGATGGTTCCACCTCTAGGGTGATGGTT 46743 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||||| |||| ||||| || || || ||||| || Sbjct 46742 TTACCAGTCAATGTTTTCACGAAGATCTGCATCTT 46708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362171554849812