Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq1282 147 2e-30
seq314 140 2e-28
seq1524 134 1e-26
seq981 109 4e-19
>seq1282
Length=29674
Score = 147 bits (162), Expect = 2e-30
Identities = 161/214 (75%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210
||| |||||||| || || || |||||||| |||||||| || || | | | ||
Sbjct 28807 TAATACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGATAATGTACGACCATC 28866
Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270
||| | |||||| ||||| | ||||||||||| || || |||||| ||||| |||||
Sbjct 28867 TTCAAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTGTC 28926
Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330
|| ||| ||| ||| |||| |||||||| | |||||| ||||| ||||||||
Sbjct 28927 TTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGT 28986
Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
||| || |||| |||||| || ||||||||||||
Sbjct 28987 TTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29020
Score = 122 bits (134), Expect = 6e-23
Identities = 157/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209
|| |||||||| || || || || ||||| |||||||| || | ||| || | |
Sbjct 29036 AATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAG--ACAATGTACGTCCAT 29093
Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269
|||| | ||| |||||||| | || |||||||| || || ||||| ||||| ||||
Sbjct 29094 CTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTGT 29153
Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329
| || ||| ||| || |||| |||||||| | ||| || ||||| |||||||
Sbjct 29154 CTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATGG 29213
Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|||| || |||| |||||| || ||||||||||||
Sbjct 29214 TTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29248
Score = 122 bits (134), Expect = 6e-23
Identities = 157/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209
|| |||||||| || || || || ||||| |||||||| || | ||| || | |
Sbjct 29264 AATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAG--ACAATGTACGTCCAT 29321
Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269
|||| | ||| |||||||| | || |||||||| || || ||||| ||||| ||||
Sbjct 29322 CTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTGT 29381
Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329
| || ||| ||| || |||| |||||||| | ||| || ||||| |||||||
Sbjct 29382 CTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATGG 29441
Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|||| || |||| |||||| || ||||||||||||
Sbjct 29442 TTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29476
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195
||| |||||||| | | || ||||| || || || || || || || || |||||
Sbjct 28564 GCCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATCCGA 28623
Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255
|| | | | || || | |||||| ||||| | || ||||||||||| || ||
Sbjct 28624 TAATGTGCGTCCATCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGAGG 28683
Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
||| ||||| ||||| || ||| || || |||| |||||||| || ||
Sbjct 28684 AATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCTCGAC 28743
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || |||||||| ||||| |||| ||||| || || || ||||||
Sbjct 28744 TTCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCATA 28792
>seq314
Length=315434
Score = 140 bits (154), Expect = 2e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| || ||||||||||| || || ||||| |||||||| || || | | | |||
Sbjct 276247 AACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGATAAGGTGCGACCATCT 276188
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| |||||||| || || | |||||||||||||| || |||||| |||||||| ||
Sbjct 276187 TCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCT 276128
Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331
||| ||| ||||||| |||| || |||||| ||| || || | ||||||||||
Sbjct 276127 TGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTAATGGTT 276068
Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||| || ||||| || ||||| || |||||
Sbjct 276067 TTACCCGTAAGAGTCTTCACAAAGATCTGCAT 276036
>seq1524
Length=218836
Score = 134 bits (148), Expect = 1e-26
Identities = 160/215 (74%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209
|| ||||| ||||| || || || || || |||||||||||| | ||| || | |
Sbjct 93 AATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGG--ACAATGTACGTCCAT 150
Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269
|||| | ||| || |||||| | |||||||| || || || ||||| ||||| ||||
Sbjct 151 CTTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGT 210
Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329
| || ||| ||| || |||| |||||||| | |||||| ||||| |||||||
Sbjct 211 CTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGG 270
Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
||||||| |||| |||||| ||||| |||||||||
Sbjct 271 TTTTACCAGTCAAAGTTTTGACAAATATTTGCATA 305
>seq981
Length=59034
Score = 109 bits (120), Expect = 4e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| || || |||||||| || || || || || ||||| ||| | | | | |||
Sbjct 46922 AACACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCGGACAACGTACGGCCATCT 46863
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| ||||| || |||||| | |||||||||||||| || |||||| || ||||| ||
Sbjct 46862 TCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCTTTATCT 46803
Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331
|||||| || ||| |||| || ||||| ||| || |||| ||| ||||||
Sbjct 46802 TGGATTTTGGCTTTCACATTTTCGATTGTATCTGATGGTTCCACCTCTAGGGTGATGGTT 46743
Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
||||| |||| ||||| || || || ||||| ||
Sbjct 46742 TTACCAGTCAATGTTTTCACGAAGATCTGCATCTT 46708
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362171554849812
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |