Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq1282 114 8e-21
seq314 113 3e-20
>seq1282
Length=29674
Score = 114 bits (126), Expect = 8e-21
Identities = 157/218 (72%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||| || ||||| | || ||||| ||||| || ||||| |||||||| | ||
Sbjct 29033 CGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTACGTCCA 29092
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273
|| || | |||||| ||| ||| |||||||||||||| || | ||| || ||||| ||
Sbjct 29093 TCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTG 29152
Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | ||| || || ||| ||| || || |||| ||| || | |||
Sbjct 29153 TCTTGGATCTTGGCC---TTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTA 29209
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| |||||||| || | |||||| ||||||||||||||
Sbjct 29210 ATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29247
Score = 114 bits (126), Expect = 8e-21
Identities = 157/218 (72%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||| || ||||| | || ||||| ||||| || ||||| |||||||| | ||
Sbjct 29261 CGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTACGTCCA 29320
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273
|| || | |||||| ||| ||| |||||||||||||| || | ||| || ||||| ||
Sbjct 29321 TCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTG 29380
Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | ||| || || ||| ||| || || |||| ||| || | |||
Sbjct 29381 TCTTGGATCTTGGCC---TTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTA 29437
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| |||||||| || | |||||| ||||||||||||||
Sbjct 29438 ATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29475
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/231 (69%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| || | || || || || ||||||| ||||| |||||||| || ||||| |||||
Sbjct 28792 ACCTCCACGTAGACGTAATACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGA 28851
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
|| | | || || | ||| || ||| ||| || ||||||||||| || | ||
Sbjct 28852 TAATGTACGACCATCTTCAAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGG 28911
Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318
|| ||||| || || | | | ||| || || ||| ||| || || ||||
Sbjct 28912 AATACCTTCCTTGTCTTGGATCTTGGCC---TTAACATTTTCAATGGTATCAGAAGGTTC 28968
Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || | ||| || |||||||| || | |||||| ||||||||||||||
Sbjct 28969 TACTTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29019
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|||||||| || || | |||||||| | ||| || || || || ||||| ||||| ||
Sbjct 28565 CCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATCCGAT 28624
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
|| || || || || | ||| || ||| ||| ||||||||||| || || | ||
Sbjct 28625 AATGTGCGTCCATCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGAGGA 28684
Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTC-GTTGGGTTGAAC 33321
|||||||| || || ||| ||| || ||| ||| || || | ||| | | ||
Sbjct 28685 ATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCTCG-AC 28743
Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|||| ||| || || || || || | ||||| ||||| || |||||
Sbjct 28744 TTCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 28791
>seq314
Length=315434
Score = 113 bits (124), Expect = 3e-20
Identities = 171/242 (71%), Gaps = 6/242 (2%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|||||||||||||| | || || || ||||| || ||||| || || || || |
Sbjct 276250 CGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGATAAGGTGCGACCA 276191
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| |||||||| || || ||| || |||||||| || || | || |||||||||||
Sbjct 276190 TCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTA 276131
Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| |||| |||| |||| ||| || || ||| |||| ||| || || ||
Sbjct 276130 TCTTGAATCTTGGCCT---TTACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTA 276074
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTATGGTTAATGTTCGCAAT 33391
|| ||||| ||||||||||| || || || || |||||| | ||| ||| | |||||
Sbjct 276073 ATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCATGATGGTGGCTAAAATAAGCAAT 276014
Query 33392 AA 33393
||
Sbjct 276013 AA 276012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318770871003336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |