Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq314 109 4e-19
seq1513 93.3 3e-14
seq1524 86.0 4e-12
seq1282 86.0 4e-12
seq429 84.2 2e-11
>seq314
Length=315434
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969
||||||||||| || || || ||||| || || || || ||| || ||||
Sbjct 276247 AACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGATAAGGTGCGACCATCT 276188
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
||||||||||| || ||||| ||||| ||||| || || | || | ||||||||||||
Sbjct 276187 TCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCT 276128
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
||| || || || | | | |||||| | || || || |||| ||||| |||
Sbjct 276127 TGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTAATGGTT 276068
Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
||||| || | |||||||||||| || ||||||
Sbjct 276067 TTACCCGTAAGAGTCTTCACAAAGATCTGCATG 276035
>seq1513
Length=127854
Score = 93.3 bits (102), Expect = 3e-14
Identities = 134/188 (71%), Gaps = 6/188 (3%)
Strand=Plus/Minus
Query 7257 TTTGATTGGCGCGACAAACACGGAGTAACACCAGTAAAAAATCAATTAATTTGCGGATCA 7316
||||||||||| || || ||| || |||||||| || |||||| | || || |||
Sbjct 45190 TTTGATTGGCGTGAAAAGAACGCTGTTACACCAGTTAAGAATCAAGGTAGCTGTGGTTCA 45131
Query 7317 TGTTGGGCTTTCAG---CACTATAGGTAACATTGAGAGTTTGTATAATATTAAATATGAC 7373
|||||||||||||| |||| || |||||||| ||||| || ||||| ||
Sbjct 45130 TGTTGGGCTTTCAGTGTCACT---GGAAACATTGAAGGTTTGAATGCAATTAAGACTGGT 45074
Query 7374 AAAGTAATCGATTTGTCAGAACAACATTTGATAAATTGCGATTTAGTAAATAACGGGTGT 7433
||| | | || || || |||||| | ||| || |||||||| ||| | | | |||
Sbjct 45073 AAATTGAATGAATTCTCTGAACAAGAATTGTTAGATTGCGATACAGTGGACAGTGCTTGT 45014
Query 7434 AATGGAGG 7441
||||||||
Sbjct 45013 AATGGAGG 45006
>seq1524
Length=218836
Score = 86.0 bits (94), Expect = 4e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989
||| || || || || |||||| ||| ||| |||| || | ||| || || || ||
Sbjct 113 CTCCTTCTGGATGTTGTAATCGGACAATGTACGTCCATCTTCAAGTTGCTTACCAGCGAA 172
Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049
||||| || ||||| || |||| | |||||| || ||| || || || || |
Sbjct 173 AATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTT 232
Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109
||| ||||| | || || || || | ||||| |||||||| || ||||| || ||
Sbjct 233 TTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGTTTTACCAGTCAAAGTTTTGAC 292
Query 44110 AAATATTTGCAT 44121
||||||||||||
Sbjct 293 AAATATTTGCAT 304
>seq1282
Length=29674
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954
|| |||||||| | | |||||||| || || || || || ||||||||||| |
Sbjct 28565 CCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATCCGAT 28624
Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014
||| || |||| || | |||||| || ||||| || || ||||| || || ||||
Sbjct 28625 AATGTGCGTCCATCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGAGGA 28684
Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074
| ||||| || || || || ||| || | ||| ||||||| ||||| ||
Sbjct 28685 ATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCTCGACT 28744
Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| | ||||| || ||||| || || || || || || || |||||
Sbjct 28745 TCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 28791
>seq429
Length=166132
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 46623 AACGTTTCCCAAATCACCCAAATGACGGTCCAGGTCTTGAGGAGCACCATGGTTTTTATG 46682
|| ||||||||||||||| |||||| | | | | ||||| ||||||| |||
Sbjct 144596 AATGTTTCCCAAATCACCGGCATGACGTACTGCGGCATCTGGAGCCCCATGGTCCTTACC 144537
Query 46683 ATGAGGATTCAAATGTTCTCCAGCCGAACTGCATCCGTTGGTGGTATCCCCGTATTCGTG 46742
||| ||||| ||||| ||||||||| |||| ||||| ||| | || ||| |||| ||
Sbjct 144536 ATGTGGATTAAAATGGGGTCCAGCCGAGGTGCAGCCGTTTGTGTTGTCTCCGAATTCATG 144477
Query 46743 AATATGTAGACCATGG 46758
||| || | ||||||
Sbjct 144476 AATGTGGAATCCATGG 144461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354770111088336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |