Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq314 109 4e-19 seq1513 93.3 3e-14 seq1524 86.0 4e-12 seq1282 86.0 4e-12 seq429 84.2 2e-11 >seq314 Length=315434 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||||||||| || || || ||||| || || || || ||| || |||| Sbjct 276247 AACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGATAAGGTGCGACCATCT 276188 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || ||||| ||||| ||||| || || | || | |||||||||||| Sbjct 276187 TCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCT 276128 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || || || | | | |||||| | || || || |||| ||||| ||| Sbjct 276127 TGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTAATGGTT 276068 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| || | |||||||||||| || |||||| Sbjct 276067 TTACCCGTAAGAGTCTTCACAAAGATCTGCATG 276035 >seq1513 Length=127854 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 7257 TTTGATTGGCGCGACAAACACGGAGTAACACCAGTAAAAAATCAATTAATTTGCGGATCA 7316 ||||||||||| || || ||| || |||||||| || |||||| | || || ||| Sbjct 45190 TTTGATTGGCGTGAAAAGAACGCTGTTACACCAGTTAAGAATCAAGGTAGCTGTGGTTCA 45131 Query 7317 TGTTGGGCTTTCAG---CACTATAGGTAACATTGAGAGTTTGTATAATATTAAATATGAC 7373 |||||||||||||| |||| || |||||||| ||||| || ||||| || Sbjct 45130 TGTTGGGCTTTCAGTGTCACT---GGAAACATTGAAGGTTTGAATGCAATTAAGACTGGT 45074 Query 7374 AAAGTAATCGATTTGTCAGAACAACATTTGATAAATTGCGATTTAGTAAATAACGGGTGT 7433 ||| | | || || || |||||| | ||| || |||||||| ||| | | | ||| Sbjct 45073 AAATTGAATGAATTCTCTGAACAAGAATTGTTAGATTGCGATACAGTGGACAGTGCTTGT 45014 Query 7434 AATGGAGG 7441 |||||||| Sbjct 45013 AATGGAGG 45006 >seq1524 Length=218836 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| || || || || |||||| ||| ||| |||| || | ||| || || || || Sbjct 113 CTCCTTCTGGATGTTGTAATCGGACAATGTACGTCCATCTTCAAGTTGCTTACCAGCGAA 172 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||| || ||||| || |||| | |||||| || ||| || || || || | Sbjct 173 AATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTT 232 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||||| | || || || || | ||||| |||||||| || ||||| || || Sbjct 233 TTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGTTTTACCAGTCAAAGTTTTGAC 292 Query 44110 AAATATTTGCAT 44121 |||||||||||| Sbjct 293 AAATATTTGCAT 304 >seq1282 Length=29674 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| | | |||||||| || || || || || ||||||||||| | Sbjct 28565 CCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATCCGAT 28624 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| || |||| || | |||||| || ||||| || || ||||| || || |||| Sbjct 28625 AATGTGCGTCCATCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGAGGA 28684 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || || || || ||| || | ||| ||||||| ||||| || Sbjct 28685 ATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCTCGACT 28744 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || ||||| || || || || || || || ||||| Sbjct 28745 TCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 28791 >seq429 Length=166132 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46623 AACGTTTCCCAAATCACCCAAATGACGGTCCAGGTCTTGAGGAGCACCATGGTTTTTATG 46682 || ||||||||||||||| |||||| | | | | ||||| ||||||| ||| Sbjct 144596 AATGTTTCCCAAATCACCGGCATGACGTACTGCGGCATCTGGAGCCCCATGGTCCTTACC 144537 Query 46683 ATGAGGATTCAAATGTTCTCCAGCCGAACTGCATCCGTTGGTGGTATCCCCGTATTCGTG 46742 ||| ||||| ||||| ||||||||| |||| ||||| ||| | || ||| |||| || Sbjct 144536 ATGTGGATTAAAATGGGGTCCAGCCGAGGTGCAGCCGTTTGTGTTGTCTCCGAATTCATG 144477 Query 46743 AATATGTAGACCATGG 46758 ||| || | |||||| Sbjct 144476 AATGTGGAATCCATGG 144461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354770111088336