Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq1361 288 9e-73
>seq1361
Length=478162
Score = 288 bits (318), Expect = 9e-73
Identities = 621/931 (67%), Gaps = 67/931 (7%)
Strand=Plus/Minus
Query 12865 ATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCAT 12924
|||||| | |||| | |||||||| || || ||||| |||||||| || || | ||||||
Sbjct 113251 ATATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCTTCTAATGATATTTGTTCCAT 113192
Query 12925 AAAATCGAAA-GGATTTTTCGAACAATAGTATTTTTT--ACACCCTAATTCTAGTAACAA 12981
||| | |||| |||||| ||||| ||| |||||| | | |||| ||||| | |||
Sbjct 113191 AAA-TGGAAATGGATTTGTCGAATTATA-TATTTTCTCAATACCC-AATTCACCAAGCAA 113135
Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041
| || || ||||| |||||||| ||| |||||||| ||| ||||| |||| || |
Sbjct 113134 ACGATCTGCTACAAATTCTATGTATTGTGACATTAAATTACAATTCATACCTAACAAATC 113075
Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101
|||||| | | ||||||||||| | || |||||| | ||| || || | ||| ||
Sbjct 113074 TACAGGTAGTGACTCTGTTAAAAATTCTTGTTCTATTTTAACGGCGTCTCGGATTATTTC 113015
Query 13102 TCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATC 13161
| | || || | ||| | | | |||||| ||||| | ||| ||||| ||
Sbjct 113014 TACAACACAGTCCTTTGTTGGTTTTTGTACCAAATGCTTGAACATTAAACAAGCAAAGTC 112955
Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221
||| || || |||||||| | |||| ||||||||||| || || |||||||| |
Sbjct 112954 ACAATGTAAACCTTCATCGCGTGAAATTAATTCGTTTGAAAAGGTCAGTCCCGGCATTAA 112895
Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281
|| ||||| || | ||||||||| | ||||| || |||||||| ||||||||
Sbjct 112894 GCCACGTTTCTTTAGCCAAAATATTGATGCAAAACTGCCACTGAAAAATATACCTTCAAC 112835
Query 13282 TGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCT 13341
|| ||||| || || | | |||||| | || ||||||| |||||| ||
Sbjct 112834 AGCCGCAAATGCAATTATACGTTCACCGAATGTTGCTGTTTTACTTGATATCCAATTCAA 112775
Query 13342 GGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAA-- 13399
||||||| ||| || | || ||||| ||| |||| ||||| ||||||||||||
Sbjct 112774 CGCCCAGTCTGCCTTCTTCTTTACGCACGGCATTGTTTCAATTGCATTAAATAAATAATC 112715
Query 13400 ----------------------ttttt--ttCCTTACTG---TCTAAAAT--ATAA---- 13426
||||| || |||||| | |||| | ||||
Sbjct 112714 TCTGATAACAAAAACAATTGAATTTTTAATTAATTACTGAATTATAAATTGAATAAACTC 112655
Query 13427 ----------------------GTATCTATCAAT-AAGCTA---TACATTTCTGAATGAA 13460
|||| ||||||| ||| || |||||||||||||| |
Sbjct 112654 ACCGTTCTGCTGGATCCTTGATGTATGTATCAATCAAGATACTGTACATTTCTGAATGTA 112595
Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGG 13520
||||||| || || |||||||| ||||| || |||||||| || | || || |||||
Sbjct 112594 TATTTTCAATAGCAATTTGGAAGCCATAGAAGCATCTAGCTTCAGTAACTTGCACTTCCT 112535
Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580
| ||||| ||| |||| ||||| ||||| || || || || |||||||| ||||
Sbjct 112534 GGCTAAATCGTTCAACTAAATTTTCATTAACAATACCATCGGATGCTGCAAAAAATGCAA 112475
Query 13581 GTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTT 13640
| | ||| ||||| |||| | || || || |||||| | || || |
Sbjct 112474 GAACGTGTGAGATAAAAAACCTTTCTTGATCGTTCAGTTTCTGCCAATCCTGTAAGTCAT 112415
Query 13641 TTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCC 13700
||||| | ||| || || || ||||| || || || ||||||| |||||||| ||
Sbjct 112414 GCGATAAGTTTACTTCTTCTACTGTCCAGAACGATGCTTCAGCCTTTTTATACATTTGCC 112355
Query 13701 ATATATCCTTATAAACAATGGGAAACACAAC 13731
|||| || | ||| ||| ||||| | |||
Sbjct 112354 ATATGTCTTGATATTGAATTGGAAATATAAC 112324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430973302500264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |