Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1361 288 9e-73 >seq1361 Length=478162 Score = 288 bits (318), Expect = 9e-73 Identities = 621/931 (67%), Gaps = 67/931 (7%) Strand=Plus/Minus Query 12865 ATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCAT 12924 |||||| | |||| | |||||||| || || ||||| |||||||| || || | |||||| Sbjct 113251 ATATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCTTCTAATGATATTTGTTCCAT 113192 Query 12925 AAAATCGAAA-GGATTTTTCGAACAATAGTATTTTTT--ACACCCTAATTCTAGTAACAA 12981 ||| | |||| |||||| ||||| ||| |||||| | | |||| ||||| | ||| Sbjct 113191 AAA-TGGAAATGGATTTGTCGAATTATA-TATTTTCTCAATACCC-AATTCACCAAGCAA 113135 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 | || || ||||| |||||||| ||| |||||||| ||| ||||| |||| || | Sbjct 113134 ACGATCTGCTACAAATTCTATGTATTGTGACATTAAATTACAATTCATACCTAACAAATC 113075 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 |||||| | | ||||||||||| | || |||||| | ||| || || | ||| || Sbjct 113074 TACAGGTAGTGACTCTGTTAAAAATTCTTGTTCTATTTTAACGGCGTCTCGGATTATTTC 113015 Query 13102 TCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATC 13161 | | || || | ||| | | | |||||| ||||| | ||| ||||| || Sbjct 113014 TACAACACAGTCCTTTGTTGGTTTTTGTACCAAATGCTTGAACATTAAACAAGCAAAGTC 112955 Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221 ||| || || |||||||| | |||| ||||||||||| || || |||||||| | Sbjct 112954 ACAATGTAAACCTTCATCGCGTGAAATTAATTCGTTTGAAAAGGTCAGTCCCGGCATTAA 112895 Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281 || ||||| || | ||||||||| | ||||| || |||||||| |||||||| Sbjct 112894 GCCACGTTTCTTTAGCCAAAATATTGATGCAAAACTGCCACTGAAAAATATACCTTCAAC 112835 Query 13282 TGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCT 13341 || ||||| || || | | |||||| | || ||||||| |||||| || Sbjct 112834 AGCCGCAAATGCAATTATACGTTCACCGAATGTTGCTGTTTTACTTGATATCCAATTCAA 112775 Query 13342 GGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAA-- 13399 ||||||| ||| || | || ||||| ||| |||| ||||| |||||||||||| Sbjct 112774 CGCCCAGTCTGCCTTCTTCTTTACGCACGGCATTGTTTCAATTGCATTAAATAAATAATC 112715 Query 13400 ----------------------ttttt--ttCCTTACTG---TCTAAAAT--ATAA---- 13426 ||||| || |||||| | |||| | |||| Sbjct 112714 TCTGATAACAAAAACAATTGAATTTTTAATTAATTACTGAATTATAAATTGAATAAACTC 112655 Query 13427 ----------------------GTATCTATCAAT-AAGCTA---TACATTTCTGAATGAA 13460 |||| ||||||| ||| || |||||||||||||| | Sbjct 112654 ACCGTTCTGCTGGATCCTTGATGTATGTATCAATCAAGATACTGTACATTTCTGAATGTA 112595 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGG 13520 ||||||| || || |||||||| ||||| || |||||||| || | || || ||||| Sbjct 112594 TATTTTCAATAGCAATTTGGAAGCCATAGAAGCATCTAGCTTCAGTAACTTGCACTTCCT 112535 Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580 | ||||| ||| |||| ||||| ||||| || || || || |||||||| |||| Sbjct 112534 GGCTAAATCGTTCAACTAAATTTTCATTAACAATACCATCGGATGCTGCAAAAAATGCAA 112475 Query 13581 GTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTT 13640 | | ||| ||||| |||| | || || || |||||| | || || | Sbjct 112474 GAACGTGTGAGATAAAAAACCTTTCTTGATCGTTCAGTTTCTGCCAATCCTGTAAGTCAT 112415 Query 13641 TTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCC 13700 ||||| | ||| || || || ||||| || || || ||||||| |||||||| || Sbjct 112414 GCGATAAGTTTACTTCTTCTACTGTCCAGAACGATGCTTCAGCCTTTTTATACATTTGCC 112355 Query 13701 ATATATCCTTATAAACAATGGGAAACACAAC 13731 |||| || | ||| ||| ||||| | ||| Sbjct 112354 ATATGTCTTGATATTGAATTGGAAATATAAC 112324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430973302500264