Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1361 179 9e-40 seq1282 161 2e-34 seq314 152 1e-31 seq644 98.7 2e-15 >seq1361 Length=478162 Score = 179 bits (198), Expect = 9e-40 Identities = 249/347 (72%), Gaps = 4/347 (1%) Strand=Plus/Plus Query 268672 GGAACCGCTTTTAGTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGA 268731 ||||||||| || |||| ||| | ||||| ||||||||||| || || || Sbjct 112290 GGAACCGCTATTGCGCGATAATCCAAGACGTTTTGTTATATTTCCAATTCAATATCAAGA 112349 Query 268732 TATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCT 268791 |||||| ||||| ||| |||| | || || || ||||| |||||||||||| | | Sbjct 112350 CATATGGCAAATGTATAAAAAGGCTGAAGCATCGTTCTGGACAGTAGAAGAAGTAAACTT 112409 Query 268792 GTCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTA 268851 || |||||||| |||||| | || | || ||||||| | ||| ||||| | Sbjct 112410 ATCGCATGACTTACAGGATTGGCAGAAACTGAACGATCAAGAAAG--GTTTTTTATCTCA 112467 Query 268852 TA--TTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAG 268909 | ||||||| |||||||||| |||||||| ||||| |||||| |||| || Sbjct 112468 CACGTTCTTGCATTTTTTGCAGCATCCGATGGTATTGTTAATGAAAATTTAGTTGAACGA 112527 Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 || | || || || || || ||||||| ||||| || || || ||||| || ||||| Sbjct 112528 TTTAGCCAGGAAGTGCAAGTTACTGAAGCTAGATGCTTCTATGGCTTCCAAATTGCTATT 112587 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 |||||||| |||||||| ||||||||| | || || ||||| || || Sbjct 112588 GAAAATATACATTCAGAAATGTACAGTATCTTGATTGATACATACAT 112634 Score = 149 bits (164), Expect = 1e-30 Identities = 302/438 (69%), Gaps = 13/438 (3%) Strand=Plus/Plus Query 269125 CGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTC--TTTT 269182 ||| ||| | || |||| ||||| ||||| |||||||||| ||||| | | | |||| Sbjct 112807 CGGTGAACGTATAATTGCATTTGCGGCTGTTGAAGGTATAT--TTTTCAGTGGCAGTTTT 112864 Query 269183 GCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAA 269242 || | || |||||| | |||||| | ||| | ||||| ||| | || || || |||||| Sbjct 112865 GCATCAATATTTTGGCTAAAGAAACGTGGCTTAATGCCGGGACTGACCTTTTCAAACGAA 112924 Query 269243 TTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTAT 269302 || || | || ||||||||||| || ||||| ||||||||| | || || || Sbjct 112925 TTAATTTCACGCGATGAAGGTTTACATTGTGACTTTGCTTGTTTAATGTT---CAAGCAT 112981 Query 269303 CTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTAT-AGATTCAGCTGTTTCTGT 269361 | ||| ||||| | | || | || ||||| || || | || ||| | Sbjct 112982 TTGGTACAAAAACCAACAAAGGACTGTGTTGTAGAAATAATCCGAGAC-GCCGTTAAAAT 113040 Query 269362 AGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATC 269421 |||| ||||||| |||| || | ||| || | ||| | | ||||||||| | || | Sbjct 113041 AGAACAAGAATTTTTAACAGAGTCACTACCTGTAGATTTGTTAGGTATGAATTGTAATTT 113100 Query 269422 GATGATAGAATATATTAAGTTCGTATCTGATAGATTGC-TGGTGTCTTTAGGGTTTAGTA 269480 ||| | |||| || | || ||| | ||| | |||| ||||| || | || || | Sbjct 113101 AATGTCACAATACATAGAATTTGTAGCAGATCGTTTGCTTGGTGAATTGGGTATTGAG-A 113159 Query 269481 AAAAATATAACGTTGA-AAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAG 269539 ||| |||||| | || |||||| ||| |||||||| | |||||||||||||| || Sbjct 113160 AAATATATAA-TTCGACAAATCCATTTCCATTTATGGAACAAATATCATTAGAAGGCAAA 113218 Query 269540 GCTAATTTCTTCGAGAAG 269557 | |||||||| || ||| Sbjct 113219 ACGAATTTCTTTGAAAAG 113236 >seq1282 Length=29674 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| | | ||| || | ||| | ||||||||| ||||| |||||||| || ||| Sbjct 28565 CCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATCCGAT 28624 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || | || || || |||||||| ||||||||||||| | |||||||| ||||| Sbjct 28625 AATGTGCGTCCATCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGAGGA 28684 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || ||||| ||||| ||||| || ||||| | |||||| || || || Sbjct 28685 ATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCTCGACT 28744 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | ||||| ||||||||||| | ||||| || || |||||||| Sbjct 28745 TCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 28791 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| ||| | || |||||||| || || || |||||||||| || | ||| ||||| Sbjct 28810 TACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGATAATGTACGACCATCTTC 28869 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 |||||||| ||||||||||| | | || ||||| || || || ||||| || || || Sbjct 28870 AAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTGTCTTG 28929 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| || || |||||||| | |||||| ||||||||| |||| ||||| || || Sbjct 28930 GATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGTTTT 28989 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||||| || || || ||||| Sbjct 28990 TCCAGTCAAAGTTTTGACGAAAATTTGCAT 29019 >seq314 Length=315434 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || ||||| |||| || | ||| ||||| | |||||| || Sbjct 276232 GTAGATTCCTTTTGGATGTTGTAGTCTGATAAGGTGCGACCATCTTCCAATTGTTTACCG 276173 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | |||||||| || || || ||||||||||| |||||||| || ||| Sbjct 276172 GCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTGAATCTTGGCCTTT 276113 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | |||||| ||||| || || || ||||| || ||||| ||||| || Sbjct 276112 ACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTAATGGTTTTACCCGTAAGAGTC 276053 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 276052 TTCACAAAGATCTGCAT 276036 >seq644 Length=264193 Score = 98.7 bits (108), Expect = 2e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 238576 AAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGC 238635 |||| || |||| |||||||| |||| || ||||| || ||| ||| || |||| Sbjct 215058 AAACGCATGATCAATTATGGAATGCCGCTCAATTACAATTGTCAAGGGAAGGAAAGATGC 215117 Query 238636 ATAGTT-TCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAG 238694 || | | |||| || ||||||||||||||||||||| | || |||||| |||| || Sbjct 215118 ATGGATATCTT-CGTATGTATTGGGCTAAAAAGATATTAGAGTGGACTGCCACTCCCGAG 215176 Query 238695 GAAGCTCTTAGATATAGTATTTATCTGAACGAT 238727 |||||||| || ||||| ||||| |||||| Sbjct 215177 GAAGCTCTGGGAACAAGTATATATCTTAACGAT 215209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151372849030256