Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1361 179 9e-40
seq1282 161 2e-34
seq314 152 1e-31
seq644 98.7 2e-15
>seq1361
Length=478162
Score = 179 bits (198), Expect = 9e-40
Identities = 249/347 (72%), Gaps = 4/347 (1%)
Strand=Plus/Plus
Query 268672 GGAACCGCTTTTAGTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGA 268731
||||||||| || |||| ||| | ||||| ||||||||||| || || ||
Sbjct 112290 GGAACCGCTATTGCGCGATAATCCAAGACGTTTTGTTATATTTCCAATTCAATATCAAGA 112349
Query 268732 TATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCT 268791
|||||| ||||| ||| |||| | || || || ||||| |||||||||||| | |
Sbjct 112350 CATATGGCAAATGTATAAAAAGGCTGAAGCATCGTTCTGGACAGTAGAAGAAGTAAACTT 112409
Query 268792 GTCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTA 268851
|| |||||||| |||||| | || | || ||||||| | ||| ||||| |
Sbjct 112410 ATCGCATGACTTACAGGATTGGCAGAAACTGAACGATCAAGAAAG--GTTTTTTATCTCA 112467
Query 268852 TA--TTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAG 268909
| ||||||| |||||||||| |||||||| ||||| |||||| |||| ||
Sbjct 112468 CACGTTCTTGCATTTTTTGCAGCATCCGATGGTATTGTTAATGAAAATTTAGTTGAACGA 112527
Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969
|| | || || || || || ||||||| ||||| || || || ||||| || |||||
Sbjct 112528 TTTAGCCAGGAAGTGCAAGTTACTGAAGCTAGATGCTTCTATGGCTTCCAAATTGCTATT 112587
Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016
|||||||| |||||||| ||||||||| | || || ||||| || ||
Sbjct 112588 GAAAATATACATTCAGAAATGTACAGTATCTTGATTGATACATACAT 112634
Score = 149 bits (164), Expect = 1e-30
Identities = 302/438 (69%), Gaps = 13/438 (3%)
Strand=Plus/Plus
Query 269125 CGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTC--TTTT 269182
||| ||| | || |||| ||||| ||||| |||||||||| ||||| | | | ||||
Sbjct 112807 CGGTGAACGTATAATTGCATTTGCGGCTGTTGAAGGTATAT--TTTTCAGTGGCAGTTTT 112864
Query 269183 GCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAA 269242
|| | || |||||| | |||||| | ||| | ||||| ||| | || || || ||||||
Sbjct 112865 GCATCAATATTTTGGCTAAAGAAACGTGGCTTAATGCCGGGACTGACCTTTTCAAACGAA 112924
Query 269243 TTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTAT 269302
|| || | || ||||||||||| || ||||| ||||||||| | || || ||
Sbjct 112925 TTAATTTCACGCGATGAAGGTTTACATTGTGACTTTGCTTGTTTAATGTT---CAAGCAT 112981
Query 269303 CTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTAT-AGATTCAGCTGTTTCTGT 269361
| ||| ||||| | | || | || ||||| || || | || ||| |
Sbjct 112982 TTGGTACAAAAACCAACAAAGGACTGTGTTGTAGAAATAATCCGAGAC-GCCGTTAAAAT 113040
Query 269362 AGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATC 269421
|||| ||||||| |||| || | ||| || | ||| | | ||||||||| | || |
Sbjct 113041 AGAACAAGAATTTTTAACAGAGTCACTACCTGTAGATTTGTTAGGTATGAATTGTAATTT 113100
Query 269422 GATGATAGAATATATTAAGTTCGTATCTGATAGATTGC-TGGTGTCTTTAGGGTTTAGTA 269480
||| | |||| || | || ||| | ||| | |||| ||||| || | || || |
Sbjct 113101 AATGTCACAATACATAGAATTTGTAGCAGATCGTTTGCTTGGTGAATTGGGTATTGAG-A 113159
Query 269481 AAAAATATAACGTTGA-AAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAG 269539
||| |||||| | || |||||| ||| |||||||| | |||||||||||||| ||
Sbjct 113160 AAATATATAA-TTCGACAAATCCATTTCCATTTATGGAACAAATATCATTAGAAGGCAAA 113218
Query 269540 GCTAATTTCTTCGAGAAG 269557
| |||||||| || |||
Sbjct 113219 ACGAATTTCTTTGAAAAG 113236
>seq1282
Length=29674
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||| | | ||| || | ||| | ||||||||| ||||| |||||||| || |||
Sbjct 28565 CCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATCCGAT 28624
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| || | || || || |||||||| ||||||||||||| | |||||||| |||||
Sbjct 28625 AATGTGCGTCCATCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGAGGA 28684
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| ||||| || ||||| ||||| ||||| || ||||| | |||||| || || ||
Sbjct 28685 ATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCTCGACT 28744
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| | ||||| ||||||||||| | ||||| || || ||||||||
Sbjct 28745 TCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 28791
Score = 149 bits (164), Expect = 1e-30
Identities = 159/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409
||||| ||| | || |||||||| || || || |||||||||| || | ||| |||||
Sbjct 28810 TACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGATAATGTACGACCATCTTC 28869
Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469
|||||||| ||||||||||| | | || ||||| || || || ||||| || || ||
Sbjct 28870 AAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTGTCTTG 28929
Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529
||||| || || |||||||| | |||||| ||||||||| |||| ||||| || ||
Sbjct 28930 GATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGTTTT 28989
Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| | ||||| || || || |||||
Sbjct 28990 TCCAGTCAAAGTTTTGACGAAAATTTGCAT 29019
>seq314
Length=315434
Score = 152 bits (168), Expect = 1e-31
Identities = 152/197 (77%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|||||||| || || || || ||||| |||| || | ||| ||||| | |||||| ||
Sbjct 276232 GTAGATTCCTTTTGGATGTTGTAGTCTGATAAGGTGCGACCATCTTCCAATTGTTTACCG 276173
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | |||||||| || || || ||||||||||| |||||||| || |||
Sbjct 276172 GCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTGAATCTTGGCCTTT 276113
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||||||| | |||||| ||||| || || || ||||| || ||||| ||||| ||
Sbjct 276112 ACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTAATGGTTTTACCCGTAAGAGTC 276053
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 276052 TTCACAAAGATCTGCAT 276036
>seq644
Length=264193
Score = 98.7 bits (108), Expect = 2e-15
Identities = 115/153 (75%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 238576 AAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGC 238635
|||| || |||| |||||||| |||| || ||||| || ||| ||| || ||||
Sbjct 215058 AAACGCATGATCAATTATGGAATGCCGCTCAATTACAATTGTCAAGGGAAGGAAAGATGC 215117
Query 238636 ATAGTT-TCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAG 238694
|| | | |||| || ||||||||||||||||||||| | || |||||| |||| ||
Sbjct 215118 ATGGATATCTT-CGTATGTATTGGGCTAAAAAGATATTAGAGTGGACTGCCACTCCCGAG 215176
Query 238695 GAAGCTCTTAGATATAGTATTTATCTGAACGAT 238727
|||||||| || ||||| ||||| ||||||
Sbjct 215177 GAAGCTCTGGGAACAAGTATATATCTTAACGAT 215209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151372849030256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |