Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1606 178 2e-39 seq922 132 6e-26 >seq1606 Length=54755 Score = 178 bits (196), Expect = 2e-39 Identities = 247/337 (73%), Gaps = 8/337 (2%) Strand=Plus/Plus Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957 || ||||| | |||||||| | ||||||| || |||||||| |||||||| | |||| Sbjct 16907 TGTGCAATCATGTATGTTAAGAGTGCATAACTGGCGACATTAAATGGTACACCAAGTCCC 16966 Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAAAATATTGTCTA--TAGCATAAAATT 7015 ||||| ||||| ||||| ||| |||||| ||||| | || || || || | |||| Sbjct 16967 ATATCAGCTGACCTTTGGTAAAGTTGACACGATAATTCACCGT-TAGCTA-CAAAGAATT 17024 Query 7016 GACACAATACA-TGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCA 7074 | |||| ||| || || || || || | || ||| | ||||||||| ||| Sbjct 17025 GT-ACAAGACAATGGCAAGGCGGCAATGCCATTTGTGGTATTTGTATTGGATTCCATGCA 17083 Query 7075 GTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAAT-TTTGTTATAATTATTTGTAA 7133 | ||| | |||||| | |||| |||||||| | |||||| ||| |||| | | || Sbjct 17084 GACATGATAATACGACGATCAGTTGGATTT-TCTTTAATCTTTTTTATCACTTCGGCTAG 17142 Query 7134 TTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATG 7193 |||||| | || |||||| |||| |||||||||||| |||| | || |||||||| Sbjct 17143 TTGATCAACCCCATGACCTGAGTAATCAGTATGACAATTATTATAGTCGGCGCCAAAATG 17202 Query 7194 TCTCCATTGAAACCCATAAATAGGACCTAAATCACCT 7230 |||||||||||| || |||| ||||| ||||||||| Sbjct 17203 TCTCCATTGAAAACCGTAAACGGGACCCAAATCACCT 17239 >seq922 Length=449141 Score = 132 bits (146), Expect = 6e-26 Identities = 497/789 (63%), Gaps = 73/789 (9%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||||| | |||||||| | ||||| ||||| ||| || | || ||| Sbjct 231672 ATTGGGATTTTGGAAAAATGGGAATTGGTGGCTTAGATAAAGAGTTCAATGCAATCTTCC 231731 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 | || || ||||||||| || | ||||| ||| |||| || | || |||||||| | Sbjct 231732 GTCGTGCGTTTGCTTCTCGAGTATTTCCTCCAGAAGTAATTGAACAGTTGGGCTGTAAGC 231791 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | ||| ||| | || | || || |||||| |||||||| | ||||| || Sbjct 231792 ATGTCCGAGGTATTCTCCTATACGGTCCACCTGGTACTGGTAAAACTCTTATGGCGCGTC 231851 Query 164573 GCATTGCTCAAGCTTTTAAA--TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATT 164630 |||| | || | || ||| || || |||||||| |||||||| | | || Sbjct 231852 AAATTGGTAAAATGCTGAACGCTCGAGAACCA--AAAATTGTGAATGGTCCACAGATTTT 231909 Query 164631 GAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG- 164689 | | |||||||| ||||| ||||||||||||||| | || ||| || ||||||| Sbjct 231910 GGATAAATATGTGGGTGAATCAGAAGCTAATGTTCGTCGTTTATTTGCTGATGCTGAAGA 231969 Query 164690 --AAGAACAA-----AAG-------------------AAAGCAGGTTTAGCTAGTA---- 164719 ||||| || ||| | || | ||||| | || Sbjct 231970 AGAAGAAAAACGAGTAAGTCCTTAATTGTATATAACTATAGTATGTTTACTGAATATATT 232029 Query 164720 --AATTA------------------------CATGTTATTGTTTTTGATGAGATAGATGC 164753 ||||| ||| | ||| |||| ||||| || ||||| Sbjct 232030 CAAATTATAGTTGGGCCCGAATAGTGGTCTTCATATCATTATTTTCGATGAAATTGATGC 232089 Query 164754 TCTTTGCAAAAAACGTGGT---------GATAATATTATT---CATGATGCAGTGGTTAA 164801 |||| ||| |||||| | ||| | | | ||||| | || || || Sbjct 232090 AATTTGTAAAGCTCGTGGTTCAGTGGCTGGTAACAGTGGTGTACATGACACCGTTGTCAA 232149 Query 164802 TCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTAT 164861 ||| ||| | ||||||| |||||||| ||| || || |||||||| | | ||||| Sbjct 232150 TCAATTGTTAGCTAAAATCGATGGTGTTGAACAATTGAACAATATTTTGGTAATTGGTAT 232209 Query 164862 GACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATTGAA 164921 |||||| || ||| | |||||||| ||| | | ||||| |||||||| || | | Sbjct 232210 GACCAATAGAAAGGATATGATTGATGAAGCTCTGATGCGACCGGGTCGATTGGAGGTACA 232269 Query 164922 AATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCATGTGGC 164981 | | ||||| | |||||||| | || || || | || ||||| || |||| || Sbjct 232270 AGTTGAAATCAGTTTACCCGATGAGGATGGTCGTGTACAGATTTTGAACATTCACACAGC 232329 Query 164982 TAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATAGCTGCCGA 165041 | |||||| | | | | | ||| ||||| || || || |||| | | Sbjct 232330 TCGTATGAAAGAATACAAAAAAATCAATCCAGATGTGAATATACGAGAATTAGCGTCGAA 232389 Query 165042 AACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGCTCAATCAACCGC 165101 ||||||||||| ||||| ||||| | || || |||||| | || || |||||| | || Sbjct 232390 AACTAAAAATTTCAGTGGAGCTGAGATTGAAGGTTTAGTACGTGCTGCACAATCATCGGC 232449 Query 165102 ATTAAGTCG 165110 | | | ||| Sbjct 232450 AATGAATCG 232458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595859099371200