Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq314 141 8e-29 seq1282 111 1e-19 seq1524 104 2e-17 seq981 95.1 1e-14 >seq314 Length=315434 Score = 141 bits (156), Expect = 8e-29 Identities = 164/219 (75%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 |||||||||||| || | |||||||||||||| | ||| || || | ||| || || Sbjct 276251 TCGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTC--TGATAAGGTGCGA 276194 Query 94852 --ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 ||| |||| ||||| ||| ||||||| || | ||| |||||||| ||||| |||||| Sbjct 276193 CCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCT 276134 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969 || || | ||| || ||||| || ||| ||| || | | || || || | || Sbjct 276133 TTATCTTGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTA 276074 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||||||| || |||||||| |||||||||||||||||| Sbjct 276073 ATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCATG 276035 >seq1282 Length=29674 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCT 94839 || |||||||| || | ||||| || | ||||||||||| || | |||||||| | | Sbjct 28565 CCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATCCGAT 28624 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || ||| |||||| || ||||| || |||| ||||| | ||| ||||||||||| Sbjct 28625 AAT-GTGCGTCCATCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGAGG 28683 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||| ||||| ||||| | || || || || ||| | | || || | | ||||| Sbjct 28684 AATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCTCGAC 28743 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||| || ||||| | ||||| || ||||||||||| Sbjct 28744 TTCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 28791 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| || || || | |||||| |||||||| | ||| || || || || | Sbjct 29033 CGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTACGTCCA 29092 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || || || || |||||||||| | |||||||||||| ||||||||||| ||| Sbjct 29093 TCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTG 29152 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| | | || |||| | || || || | || ||| Sbjct 29153 TCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATG 29212 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||||| | |||||| || || || ||||| Sbjct 29213 GTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29247 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| || || || | |||||| |||||||| | ||| || || || || | Sbjct 29261 CGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTACGTCCA 29320 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || || || || |||||||||| | |||||||||||| ||||||||||| ||| Sbjct 29321 TCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTG 29380 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| | | || |||| | || || || | || ||| Sbjct 29381 TCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATG 29440 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||||| | |||||| || || || ||||| Sbjct 29441 GTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29475 Score = 102 bits (112), Expect = 7e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 || || || || |||| ||| ||||| ||||| | ||| || || ||| ||| || Sbjct 28805 CGTAATACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAG--ATAATGTACGAC 28862 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| || || ||||| || |||| || || | |||||||||||| ||||||||||| | Sbjct 28863 CATCTTCAAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCT 28922 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || || ||||| || | | || |||| | || || || | || | Sbjct 28923 TGTCTTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAA 28982 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||||||| | |||||| || || || ||||| Sbjct 28983 TGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29019 >seq1524 Length=218836 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| || ||||| | |||||| ||||| || | ||| |||||| || || | Sbjct 90 CGCAATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGACAATGTACGTCCA 149 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || || || || | || || || | ||||||||||||||||||||||| ||| Sbjct 150 TCTTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTG 209 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| | | || |||| | || || || | || ||| Sbjct 210 TCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATG 269 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| | |||||| ||||| || ||||| Sbjct 270 GTTTTACCAGTCAAAGTTTTGACAAATATTTGCAT 304 >seq981 Length=59034 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||||||| | || || ||||| || | || || ||| || || | | Sbjct 46925 CGCAACACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCGGACAACGTACGGCCA 46866 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| || || || | ||||| || | ||| |||||||| ||||| || ||||| Sbjct 46865 TCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCTTTA 46806 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| || || || ||| || || | | || || || | |||||| Sbjct 46805 TCTTGGATTTTGGCTTTCACATTTTCGATTGTATCTGATGGTTCCACCTCTAGGGTGATG 46746 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| | |||||||| ||||||||||| Sbjct 46745 GTTTTACCAGTCAATGTTTTCACGAAGATCTGCAT 46711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448281494495520