Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1361 282 5e-71
seq1141 125 8e-24
>seq1361
Length=478162
Score = 282 bits (312), Expect = 5e-71
Identities = 388/539 (72%), Gaps = 4/539 (1%)
Strand=Plus/Minus
Query 92809 TATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTCACT 92868
||||| |||||||| |||||||||||||| || || ||||| || ||||| | ||
Sbjct 113250 TATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCTTCTAATGATATTTGTTCCATA 113191
Query 92869 AGTG--ATTGGATTCTTGGCGTTATAATACTTT-TCACCGATCAACTCGTACAATAATCT 92925
| || | |||||| | | ||||| || ||| ||| ||| || | || |
Sbjct 113190 AATGGAAATGGATTTGTCGAATTATA-TATTTTCTCAATACCCAATTCACCAAGCAAACG 113132
Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985
||| ||||||||||||||||| || ||||| |||| ||||||||| |||| | | |||
Sbjct 113131 ATCTGCTACAAATTCTATGTATTGTGACATTAAATTACAATTCATACCTAACAAATCTAC 113072
Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045
|||||| | || || || || |||| || ||| |||||| ||| | |||||||
Sbjct 113071 AGGTAGTGACTCTGTTAAAAATTCTTGTTCTATTTTAACGGCGTCTCGGATTATTTCTAC 113012
Query 93046 TACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGT 93105
|| | |||| |||||||||||| | || ||| ||||||| || ||||||||
Sbjct 113011 AACACAGTCCTTTGTTGGTTTTTGTACCAAATGCTTGAACATTAAACAAGCAAAGTCACA 112952
Query 93106 ATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165
|||||||||||| || ||||| || || || || || || | || || | | ||
Sbjct 112951 ATGTAAACCTTCATCGCGTGAAATTAATTCGTTTGAAAAGGTCAGTCCCGGCATTAAGCC 112892
Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225
|||||||| |||||||||||||| |||||||| ||| |||||||||||||| || ||
Sbjct 112891 ACGTTTCTTTAGCCAAAATATTGATGCAAAACTGCCACTGAAAAATATACCTTCAACAGC 112832
Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGC 93285
|||||||| | |||||||| | || |||| | ||||| ||||| || || ||
Sbjct 112831 CGCAAATGCAATTATACGTTCACCGAATGTTGCTGTTTTACTTGATATCCAATTCAACGC 112772
Query 93286 CCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344
||| || || || ||||| | || || | |||||| || || ||||||| |||||||
Sbjct 112771 CCAGTCTGCCTTCTTCTTTACGCACGGCATTGTTTCAATTGCATTAAATAAATAATCTC 112713
Score = 241 bits (266), Expect = 1e-58
Identities = 253/331 (76%), Gaps = 4/331 (1%)
Strand=Plus/Minus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
||||||||||| || || | | |||||||| ||||| | ||| || || |||||||||
Sbjct 112634 ATGTATGTATCAATCAAGATACTGTACATTTCTGAATGTATATTTTCAATAGCAATTTGG 112575
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481
|| || ||||| ||||||||||| || | |||||||| || ||||| || || | |
Sbjct 112574 AAGCCATAGAAGCATCTAGCTTCAGTAACTTGCACTTCCTGGCTAAATCGTTCAACTAAA 112515
Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC--CAATATATGCTTTATAAAAT 93539
|||||||| || ||||||||||||||||||||||| || || | || || ||||
Sbjct 112514 TTTTCATTAACAATACCATCGGATGCTGCAAAAAATGCAAGAACGTGTGAGATAAAAAAC 112455
Query 93540 GTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTT 93599
||||| | ||| || || || | |||||| || || | || | | |||||||
Sbjct 112454 CTTTCT--TGATCGTTCAGTTTCTGCCAATCCTGTAAGTCATGCGATAAGTTTACTTCTT 112397
Query 93600 CGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAA 93659
| || ||||| ||||||||||| || ||||| ||||| | ||||||||||||||||||||
Sbjct 112396 CTACTGTCCAGAACGATGCTTCAGCCTTTTTATACATTTGCCATATGTCTTGATATTGAA 112337
Query 93660 TTGGAAATATGACAAAACGATTAGGGTTATC 93690
|||||||||| |||||||| | || |||||
Sbjct 112336 TTGGAAATATAACAAAACGTCTTGGATTATC 112306
>seq1141
Length=29405
Score = 125 bits (138), Expect = 8e-24
Identities = 80/86 (93%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323
||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||
Sbjct 6965 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 7024
Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349
||||||||||||||||||||||||||
Sbjct 7025 TGGGTTCGAACCCCACACCTGACAAA 7050
Score = 122 bits (134), Expect = 1e-22
Identities = 78/84 (93%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323
||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||
Sbjct 4658 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 4599
Query 126324 TGGGTTCGAACCCCACACCTGACA 126347
||||||||||||||||||||||||
Sbjct 4598 TGGGTTCGAACCCCACACCTGACA 4575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556848743963680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |