Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1361 282 5e-71 seq1141 125 8e-24 >seq1361 Length=478162 Score = 282 bits (312), Expect = 5e-71 Identities = 388/539 (72%), Gaps = 4/539 (1%) Strand=Plus/Minus Query 92809 TATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTCACT 92868 ||||| |||||||| |||||||||||||| || || ||||| || ||||| | || Sbjct 113250 TATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCTTCTAATGATATTTGTTCCATA 113191 Query 92869 AGTG--ATTGGATTCTTGGCGTTATAATACTTT-TCACCGATCAACTCGTACAATAATCT 92925 | || | |||||| | | ||||| || ||| ||| ||| || | || | Sbjct 113190 AATGGAAATGGATTTGTCGAATTATA-TATTTTCTCAATACCCAATTCACCAAGCAAACG 113132 Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| ||||||||||||||||| || ||||| |||| ||||||||| |||| | | ||| Sbjct 113131 ATCTGCTACAAATTCTATGTATTGTGACATTAAATTACAATTCATACCTAACAAATCTAC 113072 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 |||||| | || || || || |||| || ||| |||||| ||| | ||||||| Sbjct 113071 AGGTAGTGACTCTGTTAAAAATTCTTGTTCTATTTTAACGGCGTCTCGGATTATTTCTAC 113012 Query 93046 TACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGT 93105 || | |||| |||||||||||| | || ||| ||||||| || |||||||| Sbjct 113011 AACACAGTCCTTTGTTGGTTTTTGTACCAAATGCTTGAACATTAAACAAGCAAAGTCACA 112952 Query 93106 ATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165 |||||||||||| || ||||| || || || || || || | || || | | || Sbjct 112951 ATGTAAACCTTCATCGCGTGAAATTAATTCGTTTGAAAAGGTCAGTCCCGGCATTAAGCC 112892 Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225 |||||||| |||||||||||||| |||||||| ||| |||||||||||||| || || Sbjct 112891 ACGTTTCTTTAGCCAAAATATTGATGCAAAACTGCCACTGAAAAATATACCTTCAACAGC 112832 Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGC 93285 |||||||| | |||||||| | || |||| | ||||| ||||| || || || Sbjct 112831 CGCAAATGCAATTATACGTTCACCGAATGTTGCTGTTTTACTTGATATCCAATTCAACGC 112772 Query 93286 CCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||| || || || ||||| | || || | |||||| || || ||||||| ||||||| Sbjct 112771 CCAGTCTGCCTTCTTCTTTACGCACGGCATTGTTTCAATTGCATTAAATAAATAATCTC 112713 Score = 241 bits (266), Expect = 1e-58 Identities = 253/331 (76%), Gaps = 4/331 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||||||||| || || | | |||||||| ||||| | ||| || || ||||||||| Sbjct 112634 ATGTATGTATCAATCAAGATACTGTACATTTCTGAATGTATATTTTCAATAGCAATTTGG 112575 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || ||||| ||||||||||| || | |||||||| || ||||| || || | | Sbjct 112574 AAGCCATAGAAGCATCTAGCTTCAGTAACTTGCACTTCCTGGCTAAATCGTTCAACTAAA 112515 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC--CAATATATGCTTTATAAAAT 93539 |||||||| || ||||||||||||||||||||||| || || | || || |||| Sbjct 112514 TTTTCATTAACAATACCATCGGATGCTGCAAAAAATGCAAGAACGTGTGAGATAAAAAAC 112455 Query 93540 GTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTT 93599 ||||| | ||| || || || | |||||| || || | || | | ||||||| Sbjct 112454 CTTTCT--TGATCGTTCAGTTTCTGCCAATCCTGTAAGTCATGCGATAAGTTTACTTCTT 112397 Query 93600 CGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAA 93659 | || ||||| ||||||||||| || ||||| ||||| | |||||||||||||||||||| Sbjct 112396 CTACTGTCCAGAACGATGCTTCAGCCTTTTTATACATTTGCCATATGTCTTGATATTGAA 112337 Query 93660 TTGGAAATATGACAAAACGATTAGGGTTATC 93690 |||||||||| |||||||| | || ||||| Sbjct 112336 TTGGAAATATAACAAAACGTCTTGGATTATC 112306 >seq1141 Length=29405 Score = 125 bits (138), Expect = 8e-24 Identities = 80/86 (93%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 6965 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 7024 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||| Sbjct 7025 TGGGTTCGAACCCCACACCTGACAAA 7050 Score = 122 bits (134), Expect = 1e-22 Identities = 78/84 (93%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 4658 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 4599 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 4598 TGGGTTCGAACCCCACACCTGACA 4575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556848743963680